C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group I, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000123247 nr1i2-203 ENSDARG00000029766 7955 + 9:9724287-9786561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000123247
Transcript ID Brain Heart Liver Muscle
ENSDART00000123247 2.765±0.00 4.161±0.00 1.218±0.00 0.958±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BS CIL_0005BS_0001 CGP 9:9662965-9786561
CIL_0005BP CIL_0005BP_0001 CGP 9:9724022-9892656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IDA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0030522 IDA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337940 NR1I2-001 protein_coding Homo_sapiens 8e-23 113
ENST00000393716 NR1I2-002 protein_coding Homo_sapiens 1e-22 113
ENST00000466380 NR1I2-003 protein_coding Homo_sapiens 1e-22 113
ENST00000493757 NR1I2-005 retained_intron Homo_sapiens 8e-23 113

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