C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermine oxidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339123 SMOX-001 ENSG00000088826 9606 + 20:4148779-4187747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungMusclePlacentaENST00000339123
Transcript ID Breast Colon Heart Liver Lung Muscle Placenta
ENST00000339123 0.336±0.00 0.088±0.00 0.660±0.00 0.203±0.00 2.170±0.00 0.452±0.00 4.192±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068E CIL_00068E_0002 CGP 20:3927309-4187747
CIL_00037W CIL_00037W_0001 CGP 20:4120980-4249074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006595 TAS polyamine metabolic process
GO:0006596 TAS polyamine biosynthetic process
GO:0006598 IDA polyamine catabolic process
GO:0006805 TAS xenobiotic metabolic process
GO:0016491 IEA oxidoreductase activity
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046208 IEA spermine catabolic process
GO:0046592 IDA polyamine oxidase activity
GO:0052894 IEA norspermine:oxygen oxidoreductase activity
GO:0052895 IEA N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity
GO:0052901 IEA spermine:oxygen oxidoreductase (spermidine-forming) activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028806 Smox-001 protein_coding Mus_musculus 0 1325
ENSMUST00000110188 Smox-011 protein_coding Mus_musculus 0 1218
ENSMUST00000110186 Smox-008 protein_coding Mus_musculus 0 1218
ENSMUST00000110189 Smox-005 protein_coding Mus_musculus 0 1218
ENSMUST00000110180 Smox-009 protein_coding Mus_musculus 0 1190
ENSMUST00000151627 Smox-004 retained_intron Mus_musculus 0 948
ENSMUST00000110179 Smox-003 protein_coding Mus_musculus 0 946
ENSMUST00000110183 Smox-007 protein_coding Mus_musculus 0 944
ENSMUST00000183947 Smox-002 nonsense_mediated_decay Mus_musculus 0 944
ENSMUST00000110181 Smox-010 protein_coding Mus_musculus 0 928
ENSMUST00000183575 Smox-013 nonsense_mediated_decay Mus_musculus 0 898
ENSMUST00000129143 Smox-012 protein_coding Mus_musculus 0 854
ENSMUST00000110182 Smox-006 protein_coding Mus_musculus 0 706
ENSMUST00000151143 Smox-017 retained_intron Mus_musculus 0 459
ENSMUST00000149180 Smox-015 processed_transcript Mus_musculus 0 346
ENSMUST00000131698 Smox-014 protein_coding Mus_musculus 0 296
ENSMUST00000183881 Smox-016 nonsense_mediated_decay Mus_musculus 1.4013e-45 189

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