C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein with multiple splicing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339877 RBPMS-003 ENSG00000157110 9606 + 8:30384511-30547522 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339877
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339877 124.879±0.00 32.212±0.00 2.686±0.00 50.551±0.00 87.093±0.00 56.622±0.00 72.681±0.00 36.495±0.00 105.338±0.00 12.666±0.00 53.491±26.27 53.762±21.85 33.557±20.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0001 VISTA 8:29977526-30581393
CIL_0008IH CIL_0008IH_0001 VISTA 8:30111104-30714589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0008143 IDA poly(A) binding
GO:0010862 IDA positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0044822 IDA poly(A) RNA binding
GO:0060391 IDA positive regulation of SMAD protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033995 Rbpms-003 protein_coding Mus_musculus 0 1133
ENSMUST00000191473 Rbpms-201 protein_coding Mus_musculus 0 863
ENSMUST00000182987 Rbpms-004 nonsense_mediated_decay Mus_musculus 0 863
ENSMUST00000053251 Rbpms-002 protein_coding Mus_musculus 0 863
ENSMUST00000033994 Rbpms-001 protein_coding Mus_musculus 0 665
ENSMUST00000183088 Rbpms-007 protein_coding Mus_musculus 0 647
ENSMUST00000182184 Rbpms-005 processed_transcript Mus_musculus 0 468
ENSMUST00000182256 Rbpms-009 nonsense_mediated_decay Mus_musculus 0 468
ENSMUST00000183062 Rbpms-010 protein_coding Mus_musculus 0 431
ENSMUST00000182871 Rbpms-006 processed_transcript Mus_musculus 0 217
ENSMUST00000183336 Rbpms-012 nonsense_mediated_decay Mus_musculus 1.4013e-45 187
ENSMUST00000182926 Rbpms-011 nonsense_mediated_decay Mus_musculus 2e-26 124

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