C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latrophilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340736 LPHN1-001 ENSG00000072071 9606 - 19:14147743-14206187 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonOvaryTestisENST00000340736
Transcript ID Adipose Brain Colon Ovary Testis
ENST00000340736 1.246±0.00 10.040±0.00 1.265±0.00 3.064±0.48 5.294±0.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004888 IEA transmembrane signaling receptor activity
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005886 ISS plasma membrane
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007186 TAS:IEA G-protein coupled receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016524 ISS latrotoxin receptor activity
GO:0030054 IEA cell junction
GO:0030246 IEA carbohydrate binding
GO:0030424 ISS axon
GO:0030426 ISS growth cone
GO:0035584 ISS calcium-mediated signaling using intracellular calcium source
GO:0042734 ISS presynaptic membrane
GO:0043005 ISS neuron projection
GO:0045202 ISS synapse
GO:0050839 ISS cell adhesion molecule binding
GO:0090129 ISS positive regulation of synapse maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045393 Lphn1-003 protein_coding Mus_musculus 0 6028
ENSMUST00000141158 Lphn1-001 protein_coding Mus_musculus 0 5936
ENSMUST00000131717 Lphn1-006 protein_coding Mus_musculus 0 5317
ENSMUST00000124355 Lphn1-002 nonsense_mediated_decay Mus_musculus 0 5317
ENSMUST00000152978 Lphn1-005 protein_coding Mus_musculus 0 4562
ENSMUST00000132500 Lphn1-004 protein_coding Mus_musculus 0 4471
ENSMUST00000150674 Lphn1-008 retained_intron Mus_musculus 0 1009
ENSMUST00000131018 Lphn1-010 protein_coding Mus_musculus 0 749
ENSMUST00000139575 Lphn1-007 processed_transcript Mus_musculus 0 719
ENSDART00000124480 LPHN1 (2 of 2)-201 protein_coding Danio_rerio 0 656
ENSMUST00000141661 Lphn1-009 retained_intron Mus_musculus 0 582
ENSDART00000123327 CABZ01084618.1-201 protein_coding Danio_rerio 0 448
ENSDART00000114576 CABZ01084615.1-201 protein_coding Danio_rerio 0 420
ENSMUST00000098595 Gm10644-201 protein_coding Mus_musculus 0 279

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