C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A)-specific ribonuclease
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341484 PARN-002 ENSG00000140694 9606 - 16:14436605-14630276 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000341484
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000341484 2.386±0.00 0.775±0.00 5.876±0.00 6.064±0.00 4.498±0.00 2.085±0.00 5.105±0.00 2.207±0.00 0.339±0.00 3.433±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DW CIL_0007DW_0001 CGP 16:14071321-14632728
CIL_0007DV CIL_0007DV_0001 CGP 16:14435701-14669236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003730 TAS mRNA 3'-UTR binding
GO:0004518 TAS nuclease activity
GO:0004535 TAS:IEA poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006402 IEA mRNA catabolic process
GO:0007292 TAS female gamete generation
GO:0009451 TAS RNA modification
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019901 IPI protein kinase binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090305 TAS nucleic acid phosphodiester bond hydrolysis
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058884 Parn-201 protein_coding Mus_musculus 0 1877

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