C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031718 Pax4-001 ENSMUSG00000029706 10090 - 6:28442334-28449353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverTestisENSMUST00000031718
Transcript ID Colon Liver Testis
ENSMUST00000031718 0.270±0.14 0.007±0.00 0.131±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0002 VISTA 6:28095025-28698247
CIL_0001OH CIL_0001OH_0002 CGP 6:28427789-28449353
CIL_0001OG CIL_0001OG_0002 CGP 6:28442334-28935162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007623 IEA circadian rhythm
GO:0009887 TAS organ morphogenesis
GO:0030154 IEA cell differentiation
GO:0031018 TAS endocrine pancreas development
GO:0042493 IEA response to drug
GO:0043066 IEA negative regulation of apoptotic process
GO:0045595 IMP regulation of cell differentiation
GO:0045597 IMP positive regulation of cell differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051591 IEA response to cAMP
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338516 PAX4-201 protein_coding Homo_sapiens 0 963
ENST00000341640 PAX4-001 protein_coding Homo_sapiens 0 909
ENST00000378740 PAX4-004 protein_coding Homo_sapiens 0 976
ENST00000463946 PAX4-002 protein_coding Homo_sapiens 0 765
ENST00000477423 PAX4-005 retained_intron Homo_sapiens 0 675
ENST00000483494 PAX4-003 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000611453 PAX4-202 protein_coding Homo_sapiens 0 675

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