C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: paired box 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174423 Pax4-005 ENSMUSG00000029706 10090 - 6:28443804-28446864 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonTestisENSMUST00000174423
Transcript ID Brain Colon Testis
ENSMUST00000174423 0.009±0.00 0.259±0.00 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0002 VISTA 6:28095025-28698247
CIL_0001OH CIL_0001OH_0002 CGP 6:28427789-28449353
CIL_0001OG CIL_0001OG_0002 CGP 6:28442334-28935162

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338516 PAX4-201 protein_coding Homo_sapiens 0 675
ENST00000341640 PAX4-001 protein_coding Homo_sapiens 0 675
ENST00000378740 PAX4-004 protein_coding Homo_sapiens 0 675
ENST00000463946 PAX4-002 protein_coding Homo_sapiens 0 811
ENST00000477423 PAX4-005 retained_intron Homo_sapiens 0 752
ENST00000483494 PAX4-003 nonsense_mediated_decay Homo_sapiens 0 813
ENST00000611453 PAX4-202 protein_coding Homo_sapiens 0 813

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