C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: corepressor interacting with RBPJ, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342016 CIR1-001 ENSG00000138433 9606 - 2:174348022-174395715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342016
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342016 8.042±0.00 0.394±0.00 7.415±5.92 4.199±3.16 5.954±5.42 3.459±3.19 6.991±0.00 1.993±0.38 4.413±3.52 2.710±2.59 7.489±4.07 10.518±1.75 18.741±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0001HA CIL_0001HA_0001 CGP 2:174334946-174395715
CIL_0003IH CIL_0003IH_0002 CGP 2:174348022-174429575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0003676 IEA nucleic acid binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058615 Cir1-001 protein_coding Mus_musculus 0 1013
ENSMUST00000117547 Gm13803-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000118681 Gm2810-001 processed_pseudogene Mus_musculus 0 641
ENSDART00000156280 si:ch211-195b15.7-001 protein_coding Danio_rerio 0.0002 53
ENSDART00000154950 si:ch211-195b15.7-002 retained_intron Danio_rerio 0.00006 53
ENSDART00000022660 si:ch211-195b15.7-201 protein_coding Danio_rerio 0.0002 53

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