C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp6 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342234 SP6-001 ENSG00000189120 9606 - 17:47844908-47855874 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonLiverLungOvaryPlacentaENST00000342234
Transcript ID Adipose Adrenal Colon Liver Lung Ovary Placenta
ENST00000342234 0.362±0.00 0.724±0.00 0.165±0.07 0.434±0.00 0.426±0.21 0.779±0.38 3.671±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047997 Sp6-001 protein_coding Mus_musculus 0 1759
ENSMUST00000107622 Sp6-002 protein_coding Mus_musculus 0 1580
ENSMUST00000090813 Sp9-001 protein_coding Mus_musculus 0 254
ENSMUST00000063918 Sp8-201 protein_coding Mus_musculus 0 231
ENSMUST00000100043 Sp5-001 protein_coding Mus_musculus 0 211

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