C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trans-acting transcription factor 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063918 Sp8-201 ENSMUSG00000048562 10090 + 12:118846329-118852578 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverPlacentaTestisENSMUST00000063918
Transcript ID Bladder Brain Liver Placenta Testis
ENSMUST00000063918 0.020±0.01 1.245±0.83 0.011±0.01 0.021±0.01 0.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T9 CIL_0007T9_0002 VISTA 12:118347247-118948361
CIL_0008JT CIL_0008JT_0002 VISTA 12:118350488-118951732
CIL_0008EN CIL_0008EN_0002 VISTA 12:118402747-119004293
CIL_0008NJ CIL_0008NJ_0002 VISTA 12:118419668-119021135
CIL_0007QC CIL_0007QC_0002 VISTA 12:118425449-119026903
CIL_0007Z1 CIL_0007Z1_0002 VISTA 12:118534480-119136076
CIL_0007YM CIL_0007YM_0002 VISTA 12:118540044-119141444
CIL_0007UH CIL_0007UH_0002 VISTA 12:118543462-119144556

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009953 IMP dorsal/ventral pattern formation
GO:0009954 IMP proximal/distal pattern formation
GO:0030326 IMP embryonic limb morphogenesis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131012 protein_coding Danio_rerio 0.000000000001 81
ENSDART00000146434 protein_coding Danio_rerio 0.000000000001 81
ENST00000340042 GLI4-201 protein_coding Homo_sapiens 0.00000001 66
ENST00000342234 SP6-001 protein_coding Homo_sapiens 0 231
ENST00000361443 SP8-002 protein_coding Homo_sapiens 0 1808
ENST00000375281 SP5-001 protein_coding Homo_sapiens 0 305
ENST00000394967 SP9-001 protein_coding Homo_sapiens 0 496
ENST00000418710 SP8-001 protein_coding Homo_sapiens 0 1808
ENST00000523522 GLI4-001 protein_coding Homo_sapiens 0.00000001 66
ENST00000523812 GLI4-002 processed_transcript Homo_sapiens 0.00000002 66
ENST00000536300 SP6-002 protein_coding Homo_sapiens 0 231
ENST00000617581 SP8-201 protein_coding Homo_sapiens 0 1203

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