C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trans-acting transcription factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100043 Sp5-001 ENSMUSG00000075304 10090 + 2:70474923-70477729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100043
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100043 1.527±1.07 3.442±0.40 0.125±0.03 4.377±3.01 0.051±0.02 0.161±0.08 0.030±0.01 2.251±0.82 0.456±0.38 2.452±0.41 0.038±0.00 1.520±0.51 0.215±0.12 0.073±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SG CIL_0004SG_0002 CGP 2:70039126-70477729
CIL_0007J4 CIL_0007J4_0002 UCNEbase 2:70317822-70475113
CIL_0004SA CIL_0004SA_0002 CGP 2:70474923-70540884

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0036342 IGI post-anal tail morphogenesis
GO:0043565 IDA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0060349 IGI bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342234 SP6-001 protein_coding Homo_sapiens 0 211
ENST00000361443 SP8-002 protein_coding Homo_sapiens 0 322
ENST00000375281 SP5-001 protein_coding Homo_sapiens 0 1746
ENST00000394967 SP9-001 protein_coding Homo_sapiens 0 327
ENST00000418710 SP8-001 protein_coding Homo_sapiens 0 322
ENST00000487037 SP5-002 processed_transcript Homo_sapiens 0 315
ENST00000536300 SP6-002 protein_coding Homo_sapiens 0 211
ENST00000617581 SP8-201 protein_coding Homo_sapiens 0 322

Loading