C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lymphocyte antigen 6 complex, locus H
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342752 LY6H-001 ENSG00000176956 9606 - 8:143157914-143160328 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000342752
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000342752 0.068±0.00 0.109±0.00 30.287±18.32 0.334±0.00 2.134±0.00 0.036±0.00 0.481±0.00 1.181±0.00 0.065±0.00 2.050±0.64 0.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NV CIL_0002NV_0001 CGP 8:143080457-143160711
CIL_0002NW CIL_0002NW_0001 CGP 8:143157914-143217170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007399 TAS nervous system development
GO:0009887 TAS organ morphogenesis
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127095 Ly6h-001 protein_coding Mus_musculus 0 824
ENSMUST00000156032 Ly6h-005 protein_coding Mus_musculus 0 708
ENSMUST00000023241 Ly6h-002 protein_coding Mus_musculus 0 641
ENSMUST00000065417 Ly6h-201 protein_coding Mus_musculus 0 640
ENSMUST00000163116 Ly6h-202 protein_coding Mus_musculus 0 632
ENSMUST00000126129 Ly6h-006 nonsense_mediated_decay Mus_musculus 0 632
ENSMUST00000150125 Ly6h-004 retained_intron Mus_musculus 0 320

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