C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reelin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343529 RELN-002 ENSG00000189056 9606 - 7:103471784-103989516 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343529 0.298±0.00 0.442±0.00 0.044±0.00 2.845±0.00 0.189±0.00 0.373±0.09 0.134±0.08 3.496±3.23 1.671±1.02 0.164±0.00 0.124±0.05 0.207±0.08 0.073±0.07 0.585±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C9 CIL_0005C9_0001 CGP 7:103352730-103989516
CIL_00040Z CIL_00040Z_0001 CGP 7:103471784-104208047

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000904 ISS cell morphogenesis involved in differentiation
GO:0001764 ISS neuron migration
GO:0004712 ISS protein serine/threonine/tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 ISS extracellular space
GO:0005737 ISS cytoplasm
GO:0006508 IEA proteolysis
GO:0007155 IEA cell adhesion
GO:0007411 ISS axon guidance
GO:0007417 ISS central nervous system development
GO:0007420 ISS brain development
GO:0008236 IEA serine-type peptidase activity
GO:0010001 ISS glial cell differentiation
GO:0010976 ISS positive regulation of neuron projection development
GO:0018108 ISS peptidyl-tyrosine phosphorylation
GO:0021511 ISS spinal cord patterning
GO:0021766 ISS hippocampus development
GO:0021800 ISS cerebral cortex tangential migration
GO:0030425 ISS dendrite
GO:0032793 ISS positive regulation of CREB transcription factor activity
GO:0038026 ISS reelin-mediated signaling pathway
GO:0045860 ISS positive regulation of protein kinase activity
GO:0046872 IEA metal ion binding
GO:0048265 ISS response to pain
GO:0050731 ISS positive regulation of peptidyl-tyrosine phosphorylation
GO:0050795 ISS regulation of behavior
GO:0050804 ISS regulation of synaptic transmission
GO:0051057 ISS positive regulation of small GTPase mediated signal transduction
GO:0051968 ISS positive regulation of synaptic transmission, glutamatergic
GO:0061003 ISS positive regulation of dendritic spine morphogenesis
GO:0061098 ISS positive regulation of protein tyrosine kinase activity
GO:0070325 ISS lipoprotein particle receptor binding
GO:0070326 ISS very-low-density lipoprotein particle receptor binding
GO:0090129 ISS positive regulation of synapse maturation
GO:1900273 ISS positive regulation of long-term synaptic potentiation
GO:2000310 ISS regulation of N-methyl-D-aspartate selective glutamate receptor activity
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential
GO:2000969 ISS positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161356 Reln-001 protein_coding Mus_musculus 0 13310
ENSMUST00000062372 Reln-002 protein_coding Mus_musculus 0 12650
ENSMUST00000162427 Reln-008 retained_intron Mus_musculus 0 4289
ENSMUST00000159768 Reln-009 retained_intron Mus_musculus 0 3101
ENSMUST00000161353 Reln-010 retained_intron Mus_musculus 0 2798
ENSMUST00000162637 Reln-004 retained_intron Mus_musculus 0 965
ENSMUST00000162622 Reln-005 retained_intron Mus_musculus 0 719
ENSMUST00000160707 Reln-006 retained_intron Mus_musculus 0 640
ENSMUST00000160791 Reln-013 processed_transcript Mus_musculus 0 604
ENSMUST00000162876 Reln-011 nonsense_mediated_decay Mus_musculus 0 558
ENSMUST00000161782 Reln-007 processed_transcript Mus_musculus 0 342
ENSMUST00000159741 Reln-012 retained_intron Mus_musculus 0 200

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