C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reelin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062372 Reln-002 ENSMUSG00000042453 10090 - 5:21885250-22344690 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungOvaryENSMUST00000062372
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000062372 0.233±0.05 0.777±0.00 0.489±0.19 0.846±0.23 0.169±0.08 0.172±0.08 5.267±0.19 0.634±0.24 2.670±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C9 CIL_0005C9_0002 CGP 5:21810655-22344702
CIL_00040Z CIL_00040Z_0002 CGP 5:21884454-22550429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000904 IMP cell morphogenesis involved in differentiation
GO:0001764 IGI neuron migration
GO:0005515 IPI protein binding
GO:0005578 TAS proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0006508 IEA proteolysis
GO:0007155 IEA cell adhesion
GO:0007411 IMP axon guidance
GO:0007417 IMP central nervous system development
GO:0007420 IMP brain development
GO:0007616 IDA long-term memory
GO:0008236 IEA serine-type peptidase activity
GO:0008306 IDA associative learning
GO:0010001 IMP glial cell differentiation
GO:0010468 IMP regulation of gene expression
GO:0010976 IMP positive regulation of neuron projection development
GO:0014068 IDA positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016358 IGI dendrite development
GO:0016477 IMP cell migration
GO:0018108 IDA peptidyl-tyrosine phosphorylation
GO:0021511 IMP spinal cord patterning
GO:0021517 IEP ventral spinal cord development
GO:0021766 IDA hippocampus development
GO:0021800 IMP cerebral cortex tangential migration
GO:0021819 IMP layer formation in cerebral cortex
GO:0021987 IMP cerebral cortex development
GO:0030425 IDA dendrite
GO:0030900 IMP forebrain development
GO:0032008 IDA positive regulation of TOR signaling
GO:0032793 IDA positive regulation of CREB transcription factor activity
GO:0035418 IMP protein localization to synapse
GO:0038026 IDA reelin-mediated signaling pathway
GO:0045860 IDA positive regulation of protein kinase activity
GO:0046872 IEA metal ion binding
GO:0048265 IMP response to pain
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0050795 IMP regulation of behavior
GO:0050804 IMP regulation of synaptic transmission
GO:0051057 IDA positive regulation of small GTPase mediated signal transduction
GO:0051968 IDA positive regulation of synaptic transmission, glutamatergic
GO:0061003 IMP positive regulation of dendritic spine morphogenesis
GO:0061098 IDA positive regulation of protein tyrosine kinase activity
GO:0070325 IPI lipoprotein particle receptor binding
GO:0070326 IPI very-low-density lipoprotein particle receptor binding
GO:0090129 IDA positive regulation of synapse maturation
GO:0097107 IC postsynaptic density assembly
GO:0097114 IMP N-methyl-D-aspartate receptor clustering
GO:0097119 IMP postsynaptic density protein 95 clustering
GO:0097120 IMP receptor localization to synapse
GO:0097477 IMP lateral motor column neuron migration
GO:1900273 IDA positive regulation of long-term synaptic potentiation
GO:1902078 IMP positive regulation of lateral motor column neuron migration
GO:2000310 IMP regulation of N-methyl-D-aspartate selective glutamate receptor activity
GO:2000463 IDA positive regulation of excitatory postsynaptic membrane potential
GO:2000969 IDA positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343529 RELN-002 protein_coding Homo_sapiens 0 12650
ENST00000424685 RELN-201 protein_coding Homo_sapiens 0 12620
ENST00000428762 RELN-001 protein_coding Homo_sapiens 0 12620
ENST00000429186 RELN-009 protein_coding Homo_sapiens 0 243
ENST00000473945 RELN-008 processed_transcript Homo_sapiens 0 457
ENST00000478148 RELN-007 retained_intron Homo_sapiens 0 536

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