C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coactivator-associated arginine methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344150 CARM1-003 ENSG00000142453 9606 + 19:10871703-10922721 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344150
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344150 15.730±0.00 13.474±0.00 6.435±4.62 1.965±0.00 0.609±0.00 1.066±0.00 3.878±3.00 1.055±0.00 1.602±0.00 13.311±8.67 19.050±6.64 23.163±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S5 CIL_0002S5_0001 CGP 19:10836575-10923070
CIL_0004ZT CIL_0004ZT_0002 CGP 19:10871513-10928681

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA:IEA cytoplasm
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006479 IEA protein methylation
GO:0008013 TAS beta-catenin binding
GO:0008152 IEA metabolic process
GO:0008168 IEA methyltransferase activity
GO:0008276 ISS:IEA protein methyltransferase activity
GO:0008469 IBA histone-arginine N-methyltransferase activity
GO:0009405 IEA pathogenesis
GO:0016032 IEA viral process
GO:0016274 ISS protein-arginine N-methyltransferase activity
GO:0016571 ISS histone methylation
GO:0019919 IBA peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0030374 ISS ligand-dependent nuclear receptor transcription coactivator activity
GO:0033146 ISS regulation of intracellular estrogen receptor signaling pathway
GO:0034970 IMP histone H3-R2 methylation
GO:0034971 ISS histone H3-R17 methylation
GO:0035242 ISS protein-arginine omega-N asymmetric methyltransferase activity
GO:0035642 ISS histone methyltransferase activity (H3-R17 specific)
GO:0042054 IDA histone methyltransferase activity
GO:0044212 ISS transcription regulatory region DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045600 ISS positive regulation of fat cell differentiation
GO:0070577 ISS lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115395 Carm1-003 protein_coding Mus_musculus 0 2507
ENSMUST00000154049 Carm1-004 retained_intron Mus_musculus 0 2200
ENSMUST00000115394 Carm1-005 protein_coding Mus_musculus 0 2198
ENSMUST00000034703 Carm1-001 protein_coding Mus_musculus 0 2198
ENSMUST00000130032 Carm1-002 nonsense_mediated_decay Mus_musculus 0 1555
ENSMUST00000147749 Carm1-006 processed_transcript Mus_musculus 0 444
ENSMUST00000139871 Carm1-007 processed_transcript Mus_musculus 0 329
ENSMUST00000132011 Carm1-008 processed_transcript Mus_musculus 2e-39 169

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