C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coactivator-associated arginine methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115395 Carm1-003 ENSMUSG00000032185 10090 + 9:21546913-21589487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLungOvaryPlacentaENSMUST00000115395
Transcript ID Adipose Breast Colon Lung Ovary Placenta
ENSMUST00000115395 10.137±0.00 8.133±0.11 8.871±1.58 8.213±0.00 13.766±1.90 11.979±4.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S5 CIL_0002S5_0002 CGP 9:21526176-21589487
CIL_0004ZT CIL_0004ZT_0003 CGP 9:21546894-21592831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003420 IMP regulation of growth plate cartilage chondrocyte proliferation
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006479 IMP protein methylation
GO:0008276 IDA protein methyltransferase activity
GO:0008284 IMP positive regulation of cell proliferation
GO:0009405 IEA pathogenesis
GO:0016274 IDA protein-arginine N-methyltransferase activity
GO:0016571 IDA histone methylation
GO:0019919 IDA peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 IDA intracellular steroid hormone receptor signaling pathway
GO:0030520 IGI intracellular estrogen receptor signaling pathway
GO:0032091 IDA negative regulation of protein binding
GO:0033146 IDA regulation of intracellular estrogen receptor signaling pathway
GO:0034969 IDA histone arginine methylation
GO:0034971 IDA histone H3-R17 methylation
GO:0035242 IDA protein-arginine omega-N asymmetric methyltransferase activity
GO:0035246 IDA peptidyl-arginine N-methylation
GO:0035642 IDA histone methyltransferase activity (H3-R17 specific)
GO:0042054 IDA histone methyltransferase activity
GO:0042803 IPI protein homodimerization activity
GO:0044212 IMP transcription regulatory region DNA binding
GO:0045600 IMP positive regulation of fat cell differentiation
GO:0060350 IMP endochondral bone morphogenesis
GO:0070577 IDA lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145908 carm1l-001 protein_coding Danio_rerio 5e-40 171
ENSDART00000122397 carm1l-201 protein_coding Danio_rerio 6e-30 137
ENST00000253031 YIPF2-001 protein_coding Homo_sapiens 1e-34 152
ENST00000327064 CARM1-002 protein_coding Homo_sapiens 0 2263
ENST00000344150 CARM1-003 protein_coding Homo_sapiens 0 2507
ENST00000586221 CARM1-001 nonsense_mediated_decay Homo_sapiens 0 1369
ENST00000586298 CARM1-010 protein_coding Homo_sapiens 0 255
ENST00000586508 CARM1-006 retained_intron Homo_sapiens 0 643
ENST00000586748 YIPF2-002 protein_coding Homo_sapiens 1e-34 152
ENST00000588947 CARM1-008 protein_coding Homo_sapiens 0 383
ENST00000589693 CARM1-005 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000589971 YIPF2-009 protein_coding Homo_sapiens 5e-35 152
ENST00000590039 CARM1-009 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000590699 CARM1-004 nonsense_mediated_decay Homo_sapiens 0 1555
ENST00000592516 CARM1-007 retained_intron Homo_sapiens 0 363
ENST00000592646 YIPF2-010 protein_coding Homo_sapiens 6e-35 152

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