C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box N3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345097 FOXN3-003 ENSG00000053254 9606 - 14:89156172-89619130 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345097
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345097 5.271±0.00 4.276±0.00 14.636±6.60 6.643±0.00 6.678±0.00 3.401±0.00 1.746±0.00 7.806±0.00 5.900±0.00 2.382±0.07 4.438±3.32 7.876±3.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KI CIL_0004KI_0001 CGP 14:88824153-89619149
CIL_0008PB CIL_0008PB_0001 VISTA 14:89047550-89650536
CIL_0008OO CIL_0008OO_0001 VISTA 14:89048358-89650633
CIL_0005C7 CIL_0005C7_0001 CGP 14:89124871-89954777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007095 IGI mitotic G2 DNA damage checkpoint
GO:0008022 IPI protein C-terminus binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120916 Gm6783-001 processed_pseudogene Mus_musculus 0 1587
ENSMUST00000085108 Foxn3-201 protein_coding Mus_musculus 0 1122
ENSMUST00000177451 Foxn3-005 protein_coding Mus_musculus 0 1122
ENSMUST00000046859 Foxn3-001 protein_coding Mus_musculus 0 1122
ENSMUST00000177269 Foxn3-007 protein_coding Mus_musculus 0 896
ENSMUST00000177287 Foxn3-006 retained_intron Mus_musculus 0 845
ENSMUST00000176928 Foxn3-008 protein_coding Mus_musculus 0 723
ENSMUST00000176959 Foxn3-002 protein_coding Mus_musculus 0 335
ENSMUST00000176829 Foxn3-004 protein_coding Mus_musculus 0 241
ENSMUST00000176311 Foxn3-003 processed_transcript Mus_musculus 2e-33 150
ENSDART00000151904 foxn3-002 protein_coding Danio_rerio 2e-32 147

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