C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroplastin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345330 NPTN-001 ENSG00000156642 9606 - 15:73560014-73633413 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345330
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345330 8.854±0.00 17.668±0.00 1.021±0.00 10.341±2.68 16.044±0.00 34.559±0.00 32.525±0.00 36.275±0.00 5.662±3.25 18.419±15.02 3.988±0.00 10.756±2.60 16.473±5.87 28.480±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HP CIL_0000HP_0002 CGP 15:73319859-73560014
CIL_0005CB CIL_0005CB_0002 CGP 15:73443158-73634134

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001934 ISS positive regulation of protein phosphorylation
GO:0005105 ISS type 1 fibroblast growth factor receptor binding
GO:0005515 IEA protein binding
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007204 ISS positive regulation of cytosolic calcium ion concentration
GO:0009986 IDA cell surface
GO:0010976 ISS positive regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0042734 ISS presynaptic membrane
GO:0045743 ISS positive regulation of fibroblast growth factor receptor signaling pathway
GO:0048170 ISS positive regulation of long-term neuronal synaptic plasticity
GO:0050839 ISS cell adhesion molecule binding
GO:0060291 ISS long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085651 Nptn-001 protein_coding Mus_musculus 0 2320
ENSMUST00000176557 Nptn-012 protein_coding Mus_musculus 0 2248
ENSMUST00000177292 Nptn-003 protein_coding Mus_musculus 0 2001
ENSMUST00000176250 Nptn-005 protein_coding Mus_musculus 0 1271
ENSMUST00000114121 Nptn-201 protein_coding Mus_musculus 0 957
ENSMUST00000176916 Nptn-006 nonsense_mediated_decay Mus_musculus 0 887
ENSMUST00000176896 Nptn-010 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000175945 Nptn-009 nonsense_mediated_decay Mus_musculus 0 667
ENSMUST00000177064 Nptn-007 protein_coding Mus_musculus 0 662
ENSMUST00000177021 Nptn-004 retained_intron Mus_musculus 0 466
ENSMUST00000177380 Nptn-002 non_stop_decay Mus_musculus 0 399
ENSMUST00000176126 Nptn-008 processed_transcript Mus_musculus 0 383

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