C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000HP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061685-ENSDARG00000069781 CGP 7955 18:804501-958293
GeneTranscriptPositionBiotype
ENSDARG00000061685 (hcn4)
hyperpolarization activated cyclic nucleotide-gated potassium channel 4 		ENSDART00000093300 (hcn4-201) 804501-943683 protein_coding
ENSDART00000136140 (hcn4-001) 804533-943685 protein_coding
CIL_0000HP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138622-ENSG00000156642 CGP 9606 15:73319859-73560014
GeneTranscriptPositionBiotype
ENSG00000138622 (HCN4)
hyperpolarization activated cyclic nucleotide-gated potassium channel 4 		ENST00000261917 (HCN4-001) 73319859-73369264 protein_coding
ENSG00000156642 (NPTN)
neuroplastin 		ENST00000345330 (NPTN-001) 73560014-73633413 protein_coding
ENST00000351217 (NPTN-002) 73560014-73634134 protein_coding
ENST00000561898 (NPTN-007) 73560934-73563492 retained_intron
ENST00000562924 (NPTN-008) 73560834-73633243 protein_coding
ENST00000563691 (NPTN-005) 73561910-73633244 protein_coding
ENST00000563753 (NPTN-006) 73591636-73633221 retained_intron
ENST00000564551 (NPTN-009) 73570274-73633227 processed_transcript
ENST00000565282 (NPTN-004) 73570228-73632805 protein_coding
ENST00000565325 (NPTN-003) 73560817-73633245 protein_coding
ENST00000567198 (NPTN-011) 73592008-73632763 protein_coding
ENSG00000183324 (REC114)
REC114 meiotic recombination protein 		ENST00000331090 (REC114-001) 73443158-73560014 protein_coding
ENST00000560581 (REC114-002) 73443164-73560010 protein_coding
ENSG00000259186 (MRPS15P1)
mitochondrial ribosomal protein S15 pseudogene 1 		ENST00000559052 (MRPS15P1-001) 73483196-73483943 processed_pseudogene
ENSG00000259650 (RP11-272D12.1)
 ENST00000557981 (RP11-272D12.1-001) 73335276-73342387 antisense
ENST00000558742 (RP11-272D12.1-002) 73335260-73342357 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000HP_0001ENSDARG00000061685ENSDART00000093300ENSDART00000136140CIL_0000HP_0002ENSG00000138622ENST00000261917ENSG00000156642ENST00000345330ENST00000351217ENST00000561898ENST00000562924ENST00000563691ENST00000563753ENST00000564551ENST00000565282ENST00000565325ENST00000567198ENSG00000183324ENST00000331090ENST00000560581ENSG00000259186ENST00000559052ENSG00000259650ENST00000557981ENST00000558742
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000HP_0001ENSDARG00000061685ENSDART00000093300ENSDART00000136140CIL_0000HP_0002ENSG00000138622ENST00000261917ENSG00000156642ENST00000345330ENST00000351217ENST00000562924ENST00000563691ENST00000564551ENST00000565325ENSG00000183324ENST00000331090ENSG00000259186ENST00000559052ENSG00000259650ENST00000557981ENST00000558742
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061685 ENSDART00000093300 N/A N/A N/A 0.512±0.00 N/A N/A N/A 0.017±0.00 N/A N/A 0.025±0.00 N/A N/A N/A
ENSDART00000136140 N/A N/A N/A 0.600±0.00 N/A N/A 0.875±0.31 0.180±0.18 N/A N/A 0.004±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138622 ENST00000261917 N/A 0.014±0.00 0.010±0.00 0.426±0.20 0.019±0.01 0.082±0.00 1.997±1.72 0.234±0.00 0.023±0.02 0.109±0.00 N/A 0.031±0.02 0.011±0.00 3.223±0.30
ENSG00000156642 ENST00000345330 8.854±0.00 17.668±0.00 1.021±0.00 10.341±2.68 16.044±0.00 34.559±0.00 32.525±0.00 36.275±0.00 5.662±3.25 18.419±15.02 3.988±0.00 10.756±2.60 16.473±5.87 28.480±0.00
ENST00000351217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.496±0.00 N/A N/A
ENST00000561898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562924 11.809±0.00 13.615±0.00 3.803±0.00 43.121±5.73 10.360±0.48 15.168±8.84 34.652±24.57 13.441±10.89 5.092±0.32 23.356±16.32 3.984±1.98 24.442±7.78 31.932±3.41 17.559±0.00
ENST00000563691 N/A N/A N/A 17.354±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564551 N/A N/A N/A 30.654±0.00 10.550±0.00 8.444±0.00 6.509±0.00 6.638±0.00 20.516±0.00 9.894±0.00 3.104±0.00 50.963±42.38 101.751±0.00 94.214±0.00
ENST00000565282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565325 N/A 14.418±0.00 5.342±0.00 N/A 6.935±0.00 9.422±0.00 N/A 4.647±0.00 13.558±0.00 7.801±0.00 N/A 18.991±5.67 24.116±0.00 N/A
ENST00000567198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183324 ENST00000331090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 72.990±49.80
ENST00000560581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259186 ENST00000559052 0.039±0.00 N/A N/A N/A 0.160±0.12 N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00
ENSG00000259650 ENST00000557981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00
ENST00000558742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.308±0.00

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