C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4 gamma, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346169 EIF4G1-007 ENSG00000114867 9606 + 3:184314495-184335353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyLiverLungOvaryPlacentaENST00000346169
Transcript ID Bladder Colon Kidney Liver Lung Ovary Placenta
ENST00000346169 2.694±0.00 6.579±0.00 5.292±0.00 3.349±0.00 2.715±0.00 12.864±4.83 7.913±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_000572 CIL_000572_0001 CGP 3:184298709-184335358
CIL_00056Z CIL_00056Z_0001 CGP 3:184314495-184346275

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723 IEA RNA binding
GO:0003743 TAS translation initiation factor activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006413 TAS translational initiation
GO:0006446 IMP regulation of translational initiation
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008219 IEA cell death
GO:0008286 TAS insulin receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115461 Eif4g1-004 protein_coding Mus_musculus 0 6316
ENSMUST00000073840 Eif4g1-201 protein_coding Mus_musculus 0 6240
ENSMUST00000044783 Eif4g1-001 protein_coding Mus_musculus 0 6148
ENSMUST00000115460 Eif4g1-011 protein_coding Mus_musculus 0 6144
ENSMUST00000115463 Eif4g1-002 protein_coding Mus_musculus 0 6137
ENSMUST00000115457 Eif4g1-003 protein_coding Mus_musculus 0 6113
ENSMUST00000132320 Eif4g1-006 retained_intron Mus_musculus 0 5395
ENSMUST00000143939 Eif4g1-007 processed_transcript Mus_musculus 0 5265
ENSMUST00000142344 Eif4g1-010 protein_coding Mus_musculus 0 3864
ENSMUST00000150333 Eif4g1-008 processed_transcript Mus_musculus 0 3018
ENSMUST00000128594 Eif4g1-009 processed_transcript Mus_musculus 0 2857
ENSMUST00000156226 Eif4g1-005 nonsense_mediated_decay Mus_musculus 0 1788
ENSMUST00000151679 Eif4g1-014 protein_coding Mus_musculus 0 854
ENSMUST00000154950 Eif4g1-012 protein_coding Mus_musculus 0 826
ENSMUST00000128840 Eif4g1-020 processed_transcript Mus_musculus 0 773
ENSMUST00000154594 Eif4g1-021 processed_transcript Mus_musculus 0 736
ENSMUST00000136713 Eif4g1-018 processed_transcript Mus_musculus 0 702
ENSMUST00000136106 Eif4g1-015 processed_transcript Mus_musculus 0 654
ENSMUST00000140576 Eif4g1-019 protein_coding Mus_musculus 0 545
ENSMUST00000141034 Eif4g1-013 protein_coding Mus_musculus 0 460
ENSMUST00000129958 Eif4g1-017 retained_intron Mus_musculus 0 276
ENSMUST00000137690 Eif4g1-016 retained_intron Mus_musculus 0 209

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