C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core-binding factor, runt domain, alpha subunit 2; translocated to, 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346541 CBFA2T2-201 ENSG00000078699 9606 + 20:33562365-33650031 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastENST00000346541
Transcript ID Brain Breast
ENST00000346541 1.403±0.00 1.305±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PI CIL_0006PI_0001 CGP 20:33407955-33650036
CIL_00051Z CIL_00051Z_0001 CGP 20:33490075-33674463

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0010976 IDA positive regulation of neuron projection development
GO:0010977 ISS negative regulation of neuron projection development
GO:0030855 IEA epithelial cell differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045270 Cbfa2t2-002 protein_coding Mus_musculus 0 2318
ENSMUST00000109725 Cbfa2t2-001 protein_coding Mus_musculus 0 2298
ENSMUST00000099178 Cbfa2t2-003 protein_coding Mus_musculus 0 1554
ENSMUST00000137526 Cbfa2t2-007 protein_coding Mus_musculus 0 1142
ENSMUST00000117165 Cbfa2t2-ps1-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000109724 Cbfa2t2-004 protein_coding Mus_musculus 0 771
ENSMUST00000155202 Cbfa2t2-005 protein_coding Mus_musculus 0 516
ENSMUST00000154487 Cbfa2t2-008 retained_intron Mus_musculus 0 464
ENSMUST00000139506 Cbfa2t2-009 retained_intron Mus_musculus 0 381
ENSMUST00000135647 Cbfa2t2-006 retained_intron Mus_musculus 0 337
ENSMUST00000077549 Prss43-201 protein_coding Mus_musculus 0.0000000004 73

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