C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 122
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349441 IFT122-004 ENSG00000163913 9606 + 3:129440244-129520351 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLungPlacentaTestisENST00000349441
Transcript ID Adipose Brain Colon Lung Placenta Testis
ENST00000349441 4.196±0.00 4.857±0.00 3.070±0.00 3.678±0.00 2.479±0.43 13.633±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507
CIL_00030V CIL_00030V_0001 CGP 3:129440036-129535169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 ISS neural tube closure
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0010172 ISS embryonic body morphogenesis
GO:0016020 IDA membrane
GO:0030991 IDA intraciliary transport particle A
GO:0032391 ISS photoreceptor connecting cilium
GO:0035050 ISS embryonic heart tube development
GO:0035721 ISS intraciliary retrograde transport
GO:0045879 ISS negative regulation of smoothened signaling pathway
GO:0048593 ISS camera-type eye morphogenesis
GO:0060173 ISS limb development
GO:0060271 ISS cilium morphogenesis
GO:0061512 IMP protein localization to cilium
GO:0072372 ISS primary cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038234 Ift122-003 protein_coding Mus_musculus 0 3751
ENSMUST00000112925 Ift122-001 protein_coding Mus_musculus 0 3731
ENSMUST00000112923 Ift122-004 protein_coding Mus_musculus 0 3435
ENSMUST00000141305 Ift122-002 nonsense_mediated_decay Mus_musculus 0 2623
ENSMUST00000124283 Ift122-005 processed_transcript Mus_musculus 0 1993
ENSMUST00000155565 Ift122-006 retained_intron Mus_musculus 0 1033
ENSMUST00000149083 Ift122-008 processed_transcript Mus_musculus 0 832
ENSMUST00000146950 Ift122-011 processed_transcript Mus_musculus 0 440
ENSMUST00000138113 Ift122-009 processed_transcript Mus_musculus 0 438
ENSMUST00000125889 Ift122-007 processed_transcript Mus_musculus 0 215

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