C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 7B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350033 COPS7B-001 ENSG00000144524 9606 + 2:231786414-231809253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverLungOvaryPlacentaENST00000350033
Transcript ID Adipose Brain Breast Colon Liver Lung Ovary Placenta
ENST00000350033 1.979±0.00 2.958±1.61 2.009±0.00 1.688±0.00 0.829±0.00 1.106±0.00 2.664±2.00 2.171±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272
CIL_0007FL CIL_0007FL_0001 CGP 2:231732425-231809254
CIL_0007FO CIL_0007FO_0001 CGP 2:231781671-231926403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0008180 IEA:IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027446 Cops7b-201 protein_coding Mus_musculus 0 2176
ENSMUST00000121534 Cops7b-001 protein_coding Mus_musculus 0 2176
ENSMUST00000138280 Cops7b-003 nonsense_mediated_decay Mus_musculus 0 1707
ENSMUST00000122884 Cops7b-002 nonsense_mediated_decay Mus_musculus 0 1565
ENSMUST00000127219 Cops7b-004 processed_transcript Mus_musculus 0 263
ENSMUST00000149542 Cops7b-005 protein_coding Mus_musculus 7.00649e-43 180

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