C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (proline IMINO transporter), member 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000353278 SLC6A20-002 ENSG00000163817 9606 - 3:45755450-45796470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverOvaryPlacentaTestisENST00000353278
Transcript ID Adipose Adrenal Breast Colon Liver Ovary Placenta Testis
ENST00000353278 0.463±0.00 0.213±0.00 0.023±0.00 0.030±0.02 0.011±0.00 1.771±0.94 0.029±0.01 0.367±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073G CIL_00073G_0001 CGP 3:45689056-45796535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IDA amino acid transmembrane transport
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006811 TAS ion transport
GO:0006836 IEA neurotransmitter transport
GO:0006865 IDA amino acid transport
GO:0015171 IDA amino acid transmembrane transporter activity
GO:0015816 IMP glycine transport
GO:0015824 IMP proline transport
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171647 Slc6a20a-002 protein_coding Mus_musculus 0 2019
ENSMUST00000040960 Slc6a20a-001 protein_coding Mus_musculus 0 1269
ENSMUST00000168824 Slc6a20b-003 nonsense_mediated_decay Mus_musculus 0 1123
ENSMUST00000171122 Slc6a20b-004 processed_transcript Mus_musculus 0 1123
ENSMUST00000026273 Slc6a20b-001 protein_coding Mus_musculus 0 1123
ENSMUST00000166800 Slc6a20b-002 retained_intron Mus_musculus 0 701
ENSMUST00000170591 Slc6a20a-003 protein_coding Mus_musculus 0 416
ENSMUST00000164241 Slc6a20b-005 processed_transcript Mus_musculus 0 412
ENSMUST00000163397 Slc6a20b-006 nonsense_mediated_decay Mus_musculus 0 296

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