C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast cancer 1, early onset
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354071 BRCA1-012 ENSG00000012048 9606 - 17:43091098-43125315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLungMuscleOvaryENST00000354071
Transcript ID Brain Breast Colon Kidney Lung Muscle Ovary
ENST00000354071 0.181±0.00 0.477±0.00 0.636±0.00 0.260±0.00 0.341±0.00 0.024±0.00 1.370±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061F CIL_00061F_0001 CGP 17:43025241-43125483
CIL_00040M CIL_00040M_0001 CGP 17:43044295-43211689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006281 IEA DNA repair
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017290 Brca1-001 protein_coding Mus_musculus 0 1465
ENSMUST00000142086 Brca1-002 nonsense_mediated_decay Mus_musculus 0 828
ENSMUST00000190862 Brca1-005 protein_coding Mus_musculus 0 259

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