C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108830-ENSG00000012048 CGP 9606 17:43025241-43125483
GeneTranscriptPositionBiotype
ENSG00000012048 (BRCA1)
breast cancer 1, early onset 		ENST00000352993 (BRCA1-029) 43044295-43125370 protein_coding
ENST00000354071 (BRCA1-012) 43091098-43125315 protein_coding
ENST00000357654 (BRCA1-001) 43044295-43125370 protein_coding
ENST00000412061 (BRCA1-026) 43093570-43095866 non_stop_decay
ENST00000461221 (BRCA1-010) 43045678-43125288 nonsense_mediated_decay
ENST00000461574 (BRCA1-022) 43076537-43091824 protein_coding
ENST00000461798 (BRCA1-020) 43099831-43125370 nonsense_mediated_decay
ENST00000468300 (BRCA1-007) 43044805-43125451 protein_coding
ENST00000470026 (BRCA1-011) 43093584-43125323 protein_coding
ENST00000471181 (BRCA1-005) 43045629-43125483 protein_coding
ENST00000472490 (BRCA1-021) 43067274-43071066 retained_intron
ENST00000473961 (BRCA1-018) 43094170-43104891 protein_coding
ENST00000476777 (BRCA1-017) 43095846-43125353 protein_coding
ENST00000477152 (BRCA1-004) 43093586-43125364 protein_coding
ENST00000478531 (BRCA1-009) 43063344-43125359 protein_coding
ENST00000484087 (BRCA1-015) 43063344-43104916 protein_coding
ENST00000487825 (BRCA1-019) 43076488-43104916 protein_coding
ENST00000489037 (BRCA1-016) 43104189-43125321 protein_coding
ENST00000491747 (BRCA1-014) 43045678-43125356 protein_coding
ENST00000492859 (BRCA1-002) 43094112-43125300 nonsense_mediated_decay
ENST00000493795 (BRCA1-006) 43045629-43125402 protein_coding
ENST00000493919 (BRCA1-008) 43063360-43125402 protein_coding
ENST00000494123 (BRCA1-013) 43094112-43125450 protein_coding
ENST00000497488 (BRCA1-003) 43094112-43125300 protein_coding
ENST00000586385 (BRCA1-023) 43045563-43125329 protein_coding
ENST00000591534 (BRCA1-024) 43045563-43125329 protein_coding
ENST00000591849 (BRCA1-025) 43045563-43125329 protein_coding
ENST00000618469 (BRCA1-027) 43124026-43125364 protein_coding
ENST00000621897 (BRCA1-028) 43076488-43082760 processed_transcript
ENSG00000108830 (RND2)
Rho family GTPase 2 		ENST00000587117 (RND2-002) 43025241-43026253 retained_intron
ENST00000587250 (RND2-001) 43025241-43032036 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00061F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001313-ENSMUSG00000017146 CGP 10090 11:101464999-101551955
GeneTranscriptPositionBiotype
ENSMUSG00000001313 (Rnd2)
Rho family GTPase 2 		ENSMUST00000001347 (Rnd2-001) 101468175-101471853 protein_coding
ENSMUST00000134980 (Rnd2-003) 101465484-101471105 processed_transcript
ENSMUST00000153185 (Rnd2-002) 101464999-101471853 processed_transcript
ENSMUSG00000017146 (Brca1)
breast cancer 1 		ENSMUST00000017290 (Brca1-001) 101488764-101551879 protein_coding
ENSMUST00000131460 (Brca1-004) 101512511-101522459 retained_intron
ENSMUST00000142086 (Brca1-002) 101525507-101551955 nonsense_mediated_decay
ENSMUST00000156843 (Brca1-003) 101496315-101508178 retained_intron
ENSMUST00000188168 (Brca1-006) 101524207-101525206 processed_transcript
ENSMUST00000190862 (Brca1-005) 101532083-101551582 protein_coding
ENSMUST00000191198 (Brca1-007) 101524193-101524858 protein_coding
ENSMUSG00000034993 (Vat1)
vesicle amine transport protein 1 homolog (T californica) 		ENSMUST00000040430 (Vat1-001) 101458745-101466230 protein_coding
ENSMUSG00000080839 (Gm11625)
predicted gene 11625 		ENSMUST00000119535 (Gm11625-001) 101476226-101476521 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061F_0001ENSG00000012048ENST00000352993ENST00000354071ENST00000357654ENST00000412061ENST00000461221ENST00000461574ENST00000468300ENST00000471181ENST00000472490ENST00000476777ENST00000484087ENST00000493919ENST00000591534ENST00000618469ENSG00000108830ENST00000587117ENST00000587250CIL_00061F_0002ENSMUSG00000001313ENSMUST00000001347ENSMUST00000134980ENSMUST00000153185ENSMUSG00000017146ENSMUST00000017290ENSMUST00000131460ENSMUST00000142086ENSMUST00000156843ENSMUST00000188168ENSMUST00000191198ENSMUSG00000034993ENSMUST00000040430ENSMUSG00000080839ENSMUST00000119535
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000012048 ENST00000352993 N/A 0.383±0.00 N/A N/A N/A 0.344±0.00 N/A 0.147±0.00 N/A N/A N/A 0.268±0.00 0.631±0.48 2.872±1.77
ENST00000354071 N/A N/A N/A 0.181±0.00 0.477±0.00 0.636±0.00 N/A 0.260±0.00 N/A 0.341±0.00 0.024±0.00 1.370±0.98 N/A N/A
ENST00000357654 N/A 0.090±0.00 N/A N/A N/A N/A 0.202±0.01 0.065±0.00 N/A 0.260±0.11 0.210±0.00 2.104±0.83 0.854±0.00 3.392±0.00
ENST00000412061 N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000461221 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.177±0.00 N/A 9.858±0.00
ENST00000461798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468300 N/A N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A 0.288±0.00 N/A N/A N/A N/A
ENST00000470026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.637±0.00 N/A N/A
ENST00000472490 N/A 1.517±0.00 N/A N/A N/A N/A N/A 1.024±0.00 N/A N/A 0.958±0.00 N/A N/A N/A
ENST00000473961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476777 N/A N/A N/A 0.958±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484087 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493919 N/A N/A N/A N/A 0.677±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591534 N/A N/A N/A N/A N/A N/A N/A 0.576±0.00 N/A N/A N/A 0.785±0.00 N/A N/A
ENST00000591849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618469 N/A 1.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108830 ENST00000587117 N/A N/A N/A N/A N/A N/A N/A N/A 1.445±0.00 N/A N/A 0.384±0.00 N/A N/A
ENST00000587250 0.432±0.00 1.290±0.00 0.036±0.00 7.781±5.78 0.498±0.43 1.604±1.31 0.132±0.10 1.183±0.66 2.221±1.95 0.398±0.30 0.114±0.02 2.005±2.05 0.245±0.11 13.343±4.63
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001313 ENSMUST00000001347 N/A N/A N/A 70.469±20.09 N/A N/A 3.732±0.00 7.123±0.00 6.695±3.43 N/A 1.347±0.12 33.584±6.94 74.941±37.49 8.227±2.89
ENSMUST00000134980 N/A N/A N/A 40.303±0.00 N/A N/A N/A N/A N/A N/A N/A 38.641±0.00 57.706±0.00 N/A
ENSMUST00000153185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.550±1.62 1.210±0.00
ENSMUSG00000017146 ENSMUST00000017290 0.242±0.00 0.123±0.05 0.199±0.01 1.063±0.19 0.132±0.07 N/A 0.021±0.01 0.054±0.02 3.120±2.75 0.117±0.02 0.027±0.02 1.634±0.99 4.167±2.73 2.236±0.61
ENSMUST00000131460 N/A 0.135±0.00 N/A N/A N/A N/A N/A 0.205±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000142086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.01 N/A N/A N/A
ENSMUST00000156843 N/A 0.051±0.00 N/A N/A N/A 0.497±0.00 N/A 0.052±0.00 0.048±0.00 N/A 0.024±0.00 N/A N/A N/A
ENSMUST00000188168 N/A 0.343±0.00 N/A N/A 0.254±0.05 N/A 0.095±0.01 N/A 0.107±0.00 N/A 0.047±0.00 1.902±0.34 N/A N/A
ENSMUST00000190862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A
ENSMUSG00000034993 ENSMUST00000040430 57.469±18.36 41.077±12.04 73.230±13.49 38.272±25.74 56.131±19.58 46.639±8.51 9.596±0.61 22.093±4.06 10.436±2.26 92.186±7.43 4.474±0.91 59.754±15.80 64.967±20.74 5.944±2.56
ENSMUSG00000080839 ENSMUST00000119535 N/A N/A 0.040±0.03 0.223±0.02 N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A 0.381±0.06 0.557±0.00

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