C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_00061F_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000108830-ENSG00000012048 | CGP | 9606 | 17:43025241-43125483  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000012048  (BRCA1)breast cancer 1, early onset |
ENST00000352993 (BRCA1-029)
|
43044295-43125370 | protein_coding | |
|
ENST00000354071 (BRCA1-012)
|
43091098-43125315 | protein_coding | ||
|
ENST00000357654 (BRCA1-001)
|
43044295-43125370 | protein_coding | ||
|
ENST00000412061 (BRCA1-026)
|
43093570-43095866 | non_stop_decay | ||
|
ENST00000461221 (BRCA1-010)
|
43045678-43125288 | nonsense_mediated_decay | ||
|
ENST00000461574 (BRCA1-022)
|
43076537-43091824 | protein_coding | ||
|
ENST00000461798 (BRCA1-020)
|
43099831-43125370 | nonsense_mediated_decay | ||
|
ENST00000468300 (BRCA1-007)
|
43044805-43125451 | protein_coding | ||
|
ENST00000470026 (BRCA1-011)
|
43093584-43125323 | protein_coding | ||
|
ENST00000471181 (BRCA1-005)
|
43045629-43125483 | protein_coding | ||
|
ENST00000472490 (BRCA1-021)
|
43067274-43071066 | retained_intron | ||
|
ENST00000473961 (BRCA1-018)
|
43094170-43104891 | protein_coding | ||
|
ENST00000476777 (BRCA1-017)
|
43095846-43125353 | protein_coding | ||
|
ENST00000477152 (BRCA1-004)
|
43093586-43125364 | protein_coding | ||
|
ENST00000478531 (BRCA1-009)
|
43063344-43125359 | protein_coding | ||
|
ENST00000484087 (BRCA1-015)
|
43063344-43104916 | protein_coding | ||
|
ENST00000487825 (BRCA1-019)
|
43076488-43104916 | protein_coding | ||
|
ENST00000489037 (BRCA1-016)
|
43104189-43125321 | protein_coding | ||
|
ENST00000491747 (BRCA1-014)
|
43045678-43125356 | protein_coding | ||
|
ENST00000492859 (BRCA1-002)
|
43094112-43125300 | nonsense_mediated_decay | ||
|
ENST00000493795 (BRCA1-006)
|
43045629-43125402 | protein_coding | ||
|
ENST00000493919 (BRCA1-008)
|
43063360-43125402 | protein_coding | ||
|
ENST00000494123 (BRCA1-013)
|
43094112-43125450 | protein_coding | ||
|
ENST00000497488 (BRCA1-003)
|
43094112-43125300 | protein_coding | ||
|
ENST00000586385 (BRCA1-023)
|
43045563-43125329 | protein_coding | ||
|
ENST00000591534 (BRCA1-024)
|
43045563-43125329 | protein_coding | ||
|
ENST00000591849 (BRCA1-025)
|
43045563-43125329 | protein_coding | ||
|
ENST00000618469 (BRCA1-027)
|
43124026-43125364 | protein_coding | ||
|
ENST00000621897 (BRCA1-028)
|
43076488-43082760 | processed_transcript | ||
|
ENSG00000108830 (RND2) Rho family GTPase 2 |
ENST00000587117 (RND2-002)
|
43025241-43026253 | retained_intron | |
|
ENST00000587250 (RND2-001)
|
43025241-43032036 | protein_coding | ||
| CIL_00061F_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000001313-ENSMUSG00000017146 | CGP | 10090 | 11:101464999-101551955 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000001313 (Rnd2) Rho family GTPase 2 |
ENSMUST00000001347 (Rnd2-001)
|
101468175-101471853 | protein_coding | |
|
ENSMUST00000134980 (Rnd2-003)
|
101465484-101471105 | processed_transcript | ||
|
ENSMUST00000153185 (Rnd2-002)
|
101464999-101471853 | processed_transcript | ||
|
ENSMUSG00000017146 (Brca1) breast cancer 1 |
ENSMUST00000017290 (Brca1-001)
|
101488764-101551879 | protein_coding | |
|
ENSMUST00000131460 (Brca1-004)
|
101512511-101522459 | retained_intron | ||
|
ENSMUST00000142086 (Brca1-002)
|
101525507-101551955 | nonsense_mediated_decay | ||
|
ENSMUST00000156843 (Brca1-003)
|
101496315-101508178 | retained_intron | ||
|
ENSMUST00000188168 (Brca1-006)
|
101524207-101525206 | processed_transcript | ||
|
ENSMUST00000190862 (Brca1-005)
|
101532083-101551582 | protein_coding | ||
|
ENSMUST00000191198 (Brca1-007)
|
101524193-101524858 | protein_coding | ||
|
ENSMUSG00000034993 (Vat1) vesicle amine transport protein 1 homolog (T californica) |
ENSMUST00000040430 (Vat1-001)
|
101458745-101466230 | protein_coding | |
|
ENSMUSG00000080839 (Gm11625) predicted gene 11625 |
ENSMUST00000119535 (Gm11625-001)
|
101476226-101476521 | processed_pseudogene | |
Expression Patterns
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