C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast cancer 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190862 Brca1-005 ENSMUSG00000017146 10090 - 11:101532083-101551582 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061F CIL_00061F_0002 CGP 11:101464999-101551955
CIL_00040M CIL_00040M_0002 CGP 11:101488764-101581951

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352993 BRCA1-029 protein_coding Homo_sapiens 0 259
ENST00000354071 BRCA1-012 protein_coding Homo_sapiens 0 259
ENST00000357654 BRCA1-001 protein_coding Homo_sapiens 0 259
ENST00000461221 BRCA1-010 nonsense_mediated_decay Homo_sapiens 8e-36 158
ENST00000461798 BRCA1-020 nonsense_mediated_decay Homo_sapiens 8e-37 158
ENST00000468300 BRCA1-007 protein_coding Homo_sapiens 0 259
ENST00000470026 BRCA1-011 protein_coding Homo_sapiens 0 259
ENST00000471181 BRCA1-005 protein_coding Homo_sapiens 0 259
ENST00000476777 BRCA1-017 protein_coding Homo_sapiens 0 259
ENST00000477152 BRCA1-004 protein_coding Homo_sapiens 0.00000000003 75
ENST00000478531 BRCA1-009 protein_coding Homo_sapiens 0 259
ENST00000489037 BRCA1-016 protein_coding Homo_sapiens 0.000000000006 75
ENST00000491747 BRCA1-014 protein_coding Homo_sapiens 0 259
ENST00000492859 BRCA1-002 nonsense_mediated_decay Homo_sapiens 0.00000000002 75
ENST00000494123 BRCA1-013 protein_coding Homo_sapiens 0 259

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