C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 72 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354473 VPS72-002 ENSG00000163159 9606 - 1:151176462-151190158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000354473
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000354473 10.440±0.00 18.080±0.00 8.432±4.23 7.040±3.38 9.292±3.83 5.510±3.99 7.115±4.42 5.586±1.36 7.144±5.25 45.006±42.60 30.408±22.05 30.745±10.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UG CIL_0000UG_0002 CGP 1:151156664-151170297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0035019 IEA somatic stem cell maintenance
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009102 Vps72-001 protein_coding Mus_musculus 0 1142
ENSMUST00000125548 Vps72-004 processed_transcript Mus_musculus 0 872
ENSMUST00000173594 Gm18737-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000152333 Vps72-005 retained_intron Mus_musculus 0 501
ENSMUST00000139296 Vps72-002 processed_transcript Mus_musculus 0 383
ENSMUST00000136076 Vps72-003 processed_transcript Mus_musculus 0 219

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