C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0000UG_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSDARG00000003027-ENSDARG00000054789 | CGP | 7955 | 16:31931571-31942803  |
|
| Gene | Transcript | Position | Biotype | |
ENSDARG00000003027  (scnm1)sodium channel modifier 1 |
ENSDART00000004284 (scnm1-001)
|
31931895-31936210 | protein_coding | |
|
ENSDART00000132351 (scnm1-002)
|
31931571-31936202 | protein_coding | ||
|
ENSDART00000133965 (scnm1-003)
|
31935722-31936226 | processed_transcript | ||
|
ENSDARG00000054789 (lysmd1) LysM, putative peptidoglycan-binding, domain containing 1 |
ENSDART00000103054 (lysmd1-001)
|
31936722-31942803 | protein_coding | |
| CIL_0000UG_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000163156-ENSG00000163156 | CGP | 9606 | 1:151156664-151170297 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSG00000163154 (TNFAIP8L2) tumor necrosis factor, alpha-induced protein 8-like 2 |
ENST00000368910 (TNFAIP8L2-001)
|
151156629-151159749 | protein_coding | |
|
ENSG00000163155 (LYSMD1) LysM, putative peptidoglycan-binding, domain containing 1 |
ENST00000368908 (LYSMD1-001)
|
151159748-151165919 | protein_coding | |
|
ENST00000440902 (LYSMD1-002)
|
151160585-151165948 | protein_coding | ||
|
ENSG00000163156 (SCNM1) sodium channel modifier 1 |
ENST00000368902 (SCNM1-004)
|
151166079-151169138 | protein_coding | |
|
ENST00000368905 (SCNM1-001)
|
151166042-151170297 | protein_coding | ||
|
ENST00000459799 (SCNM1-005)
|
151167868-151169133 | processed_transcript | ||
|
ENST00000461862 (SCNM1-002)
|
151166022-151167979 | processed_transcript | ||
|
ENST00000471039 (SCNM1-003)
|
151166066-151166950 | processed_transcript | ||
|
ENST00000497147 (SCNM1-006)
|
151166669-151169111 | processed_transcript | ||
|
ENST00000602841 (SCNM1-007)
|
151156664-151169133 | protein_coding | ||
|
ENSG00000163157 (TMOD4) tropomodulin 4 (muscle) |
ENST00000295314 (TMOD4-001)
|
151169987-151176016 | protein_coding | |
|
ENST00000441701 (TMOD4-005)
|
151172329-151175976 | protein_coding | ||
|
ENST00000463543 (TMOD4-002)
|
151169988-151175981 | nonsense_mediated_decay | ||
|
ENST00000466891 (TMOD4-004)
|
151169986-151172315 | protein_coding | ||
|
ENST00000488488 (TMOD4-006)
|
151171433-151175949 | processed_transcript | ||
|
ENST00000601585 (TMOD4-007)
|
151175617-151176284 | processed_transcript | ||
|
ENSG00000163159 (VPS72) vacuolar protein sorting 72 homolog (S. cerevisiae) |
ENST00000354473 (VPS72-002)
|
151176462-151190158 | protein_coding | |
|
ENST00000368892 (VPS72-001)
|
151176304-151190213 | protein_coding | ||
|
ENST00000463470 (VPS72-004)
|
151185540-151195321 | processed_transcript | ||
|
ENST00000471423 (VPS72-005)
|
151185522-151190143 | retained_intron | ||
|
ENST00000491094 (VPS72-003)
|
151169987-151190188 | retained_intron | ||
|
ENST00000496809 (VPS72-007)
|
151176731-151190145 | processed_transcript | ||
| CIL_0000UG_0003 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000092607-ENSMUSG00000053769 | CGP | 10090 | 3:95129536-95139518 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000053769 (Lysmd1) LysM, putative peptidoglycan-binding, domain containing 1 |
ENSMUST00000066386 (Lysmd1-001)
|
95134088-95139518 | protein_coding | |
|
ENSMUSG00000092607 (Scnm1) sodium channel modifier 1 |
ENSMUST00000172572 (Scnm1-001)
|
95129536-95134011 | protein_coding | |
|
ENSMUST00000173462 (Scnm1-003)
|
95129729-95134011 | protein_coding | ||
|
ENSMUST00000173527 (Scnm1-005)
|
95130293-95133939 | retained_intron | ||
|
ENSMUST00000174508 (Scnm1-008)
|
95129719-95130684 | retained_intron | ||
|
ENSMUST00000174835 (Scnm1-007)
|
95129726-95131266 | processed_transcript | ||
|
ENSMUST00000174859 (Scnm1-004)
|
95129720-95133773 | retained_intron | ||
Expression Patterns
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