C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 72 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163159 VPS72 9606 - 1:151169987-151195321 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354473 VPS72-002 151176462-151190158 protein_coding
  ENST00000368892 VPS72-001 151176304-151190213 protein_coding
  ENST00000463470 VPS72-004 151185540-151195321 processed_transcript
  ENST00000471423 VPS72-005 151185522-151190143 retained_intron
  ENST00000491094 VPS72-003 151169987-151190188 retained_intron
  ENST00000496809 VPS72-007 151176731-151190145 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000354473ENST00000368892ENST00000471423ENST00000491094ENST00000496809
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000354473 10.440±0.00 18.080±0.00 N/A 8.432±4.23 7.040±3.38 9.292±3.83 5.510±3.99 7.115±4.42 5.586±1.36 7.144±5.25 45.006±42.60 30.408±22.05 30.745±10.50
ENST00000368892 N/A N/A 1.714±0.00 11.292±0.00 2.765±0.00 N/A 1.099±0.00 N/A 3.446±0.00 3.446±0.00 14.717±9.04 18.497±6.25 N/A
ENST00000471423 N/A N/A 3.616±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491094 N/A N/A N/A N/A N/A N/A N/A N/A 0.586±0.00 N/A N/A N/A N/A
ENST00000496809 8.345±0.00 20.629±0.00 N/A 20.259±0.00 17.870±0.00 18.379±0.00 9.236±0.00 18.118±0.00 4.573±0.00 11.168±0.00 27.398±13.14 29.142±0.00 18.959±4.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UG CIL_0000UG_0002 CGP 1:151156664-151170297

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0035019 IEA somatic stem cell maintenance
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063718 vps72 vacuolar protein sorting 72 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000088567 VPS72 (2 of 2) vacuolar protein sorting 72 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000008958 Vps72 vacuolar protein sorting 72 (yeast) protein_coding Mus_musculus

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