C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat and Ig domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355300 LINGO1-001 ENSG00000169783 9606 - 15:77613027-77632490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355300 1.468±0.00 1.892±0.00 0.030±0.00 13.808±11.69 1.800±0.00 1.066±0.00 0.413±0.00 0.766±0.00 0.322±0.00 0.099±0.00 0.220±0.00 0.925±0.66 5.206±2.55 2.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SZ CIL_0003SZ_0001 CGP 15:77420412-77820900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0016021 IEA integral component of membrane
GO:0021954 IEA central nervous system neuron development
GO:0031175 IEA neuron projection development
GO:0043491 IEA protein kinase B signaling
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048715 IEA negative regulation of oligodendrocyte differentiation
GO:0050770 TAS regulation of axonogenesis
GO:0050771 TAS negative regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053568 Lingo1-001 protein_coding Mus_musculus 0 3404
ENSMUST00000114256 Lingo1-003 protein_coding Mus_musculus 0 3007
ENSMUST00000114247 Lingo1-002 protein_coding Mus_musculus 0 2800
ENSDART00000041820 lingo1a-201 protein_coding Danio_rerio 0 815
ENSDART00000149965 lingo1a-001 protein_coding Danio_rerio 0 815

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