C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat and Ig domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053568 Lingo1-001 ENSMUSG00000049556 10090 - 9:56618475-56685253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000053568
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000053568 0.417±0.09 0.303±0.12 0.166±0.00 9.114±1.99 0.081±0.00 0.122±0.02 0.192±0.03 0.095±0.04 0.055±0.03 0.037±0.00 0.090±0.01 0.160±0.11 0.482±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SZ CIL_0003SZ_0002 CGP 9:56418644-56685253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IPI epidermal growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0021954 IDA central nervous system neuron development
GO:0031175 IDA neuron projection development
GO:0043491 IDA protein kinase B signaling
GO:0048715 IMP negative regulation of oligodendrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341864 TAF9B-001 protein_coding Homo_sapiens 0.000004 58
ENST00000355300 LINGO1-001 protein_coding Homo_sapiens 0 3404
ENST00000373631 CRB2-001 protein_coding Homo_sapiens 0.0001 55
ENST00000557798 LINGO1-003 protein_coding Homo_sapiens 0 1301
ENST00000559893 LINGO1-004 protein_coding Homo_sapiens 0 254
ENST00000561030 LINGO1-002 protein_coding Homo_sapiens 0 2789
ENST00000561686 LINGO1-013 protein_coding Homo_sapiens 0 737
ENST00000564472 LINGO1-006 protein_coding Homo_sapiens 1.99965e-42 176
ENST00000566711 LINGO1-014 protein_coding Homo_sapiens 0 326
ENST00000567726 LINGO1-005 protein_coding Homo_sapiens 0 534
ENST00000570216 LINGO1-008 protein_coding Homo_sapiens 1e-20 104

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