C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 536
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355537 ZNF536-004 ENSG00000198597 9606 + 19:30372412-30558059 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLungMuscleOvaryTestisENST00000355537
Transcript ID Adrenal Brain Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000355537 0.123±0.00 5.506±4.18 0.835±0.00 0.178±0.05 0.039±0.00 0.012±0.00 0.025±0.00 0.026±0.02 0.724±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000835 CIL_000835_0001 VISTA 19:29703707-30304596
CIL_000834 CIL_000834_0001 VISTA 19:29775043-30376109
CIL_00090S CIL_00090S_0001 VISTA 19:29783480-30384453
CIL_0007OB CIL_0007OB_0001 UCNEbase 19:29888853-30910612
CIL_0007PW CIL_0007PW_0001 VISTA 19:29956150-30557741
CIL_000833 CIL_000833_0001 VISTA 19:29976151-30577366
CIL_000825 CIL_000825_0001 VISTA 19:30049392-30652629
CIL_000907 CIL_000907_0001 VISTA 19:30070281-30671909
CIL_00088T CIL_00088T_0001 VISTA 19:30101501-30702618
CIL_000832 CIL_000832_0001 VISTA 19:30212034-30813355
CIL_0004NK CIL_0004NK_0002 CGP 19:30228290-31349547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044323 IEA retinoic acid-responsive element binding
GO:0045665 IEA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0048387 IEA negative regulation of retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176205 Zfp536-005 protein_coding Mus_musculus 0 4013
ENSMUST00000176114 Zfp536-004 protein_coding Mus_musculus 0 4013
ENSMUST00000056338 Zfp536-001 protein_coding Mus_musculus 0 4013
ENSMUST00000175941 Zfp536-003 protein_coding Mus_musculus 0 4013
ENSMUST00000176129 Zfp536-002 protein_coding Mus_musculus 0 641
ENSMUST00000176680 Zfp536-009 protein_coding Mus_musculus 0 562
ENSMUST00000176534 Zfp536-008 protein_coding Mus_musculus 0 418

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