C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073961 Ptpre-201 ENSMUSG00000041836 10090 + 7:135537824-135686294 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073961 1.797±0.31 0.945±0.25 2.765±0.02 2.992±2.02 4.296±0.86 3.222±0.82 0.912±0.21 0.674±0.16 1.227±0.91 12.730±0.36 0.195±0.11 4.792±2.52 1.943±0.56 2.674±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083E CIL_00083E_0002 VISTA 7:135456830-136057856
CIL_0001LJ CIL_0001LJ_0002 CGP 7:135511466-135686294
CIL_00028S CIL_00028S_0002 CGP 7:135537824-135716379

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IDA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007185 IDA transmembrane receptor protein tyrosine phosphatase signaling pathway
GO:0016021 IEA integral component of membrane
GO:0033003 IMP regulation of mast cell activation
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0042803 IDA protein homodimerization activity
GO:0046627 IDA negative regulation of insulin receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111090 ptprh-201 protein_coding Danio_rerio 0.00000005 66
ENSDART00000131392 ptprh-001 protein_coding Danio_rerio 0.00000005 66
ENST00000216877 PTPRA-001 protein_coding Homo_sapiens 0 630
ENST00000254667 PTPRE-003 protein_coding Homo_sapiens 0 2717
ENST00000306042 PTPRE-004 protein_coding Homo_sapiens 0 2425
ENST00000318266 PTPRA-002 protein_coding Homo_sapiens 0 630
ENST00000356147 PTPRA-201 protein_coding Homo_sapiens 0 630
ENST00000380393 PTPRA-003 protein_coding Homo_sapiens 0 630
ENST00000399903 PTPRA-202 protein_coding Homo_sapiens 0 630
ENST00000442830 PTPRE-007 protein_coding Homo_sapiens 0 418
ENST00000455661 PTPRE-006 protein_coding Homo_sapiens 0 457
ENST00000463727 PTPRE-001 retained_intron Homo_sapiens 0 281
ENST00000467366 PTPRE-010 protein_coding Homo_sapiens 0 340
ENST00000471218 PTPRE-008 protein_coding Homo_sapiens 0 446
ENST00000479896 PTPRE-005 nonsense_mediated_decay Homo_sapiens 0 1354
ENST00000487428 PTPRE-002 retained_intron Homo_sapiens 0 198
ENST00000492479 PTPRE-011 retained_intron Homo_sapiens 0 791
ENST00000495530 PTPRE-009 nonsense_mediated_decay Homo_sapiens 0 732

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