C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pseudouridylate synthase 7 (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356362 PUS7-002 ENSG00000091127 9606 - 7:105456511-105522258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000356362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000356362 2.662±0.00 3.279±0.00 0.433±0.00 0.554±0.02 0.976±0.35 0.732±0.52 0.342±0.00 1.468±0.00 1.663±0.00 2.021±0.00 5.171±2.89 1.593±0.54 2.214±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BH CIL_0005BH_0002 CGP 7:105110704-105522267
CIL_00040X CIL_00040X_0001 CGP 7:105439661-105567677

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0008033 IEA tRNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0019899 IPI enzyme binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131992 Pus7-002 protein_coding Mus_musculus 0 2019
ENSMUST00000119946 Pus7-001 protein_coding Mus_musculus 0 2019
ENSMUST00000148618 Pus7-003 protein_coding Mus_musculus 0 1895
ENSMUST00000131404 Pus7-008 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000147922 Pus7-005 processed_transcript Mus_musculus 0 544
ENSMUST00000151449 Pus7-004 nonsense_mediated_decay Mus_musculus 0 401
ENSMUST00000148921 Pus7-006 processed_transcript Mus_musculus 0 283
ENSMUST00000129848 Pus7-007 processed_transcript Mus_musculus 0.000000000000006 88

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