C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: B-cell CLL/lymphoma 11B (zinc finger protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357195 BCL11B-001 ENSG00000127152 9606 - 14:99169287-99271228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLiverLungMuscleOvaryPlacentaTestisENST00000357195
Transcript ID Adrenal Brain Breast Liver Lung Muscle Ovary Placenta Testis
ENST00000357195 2.189±0.00 0.800±0.30 0.250±0.00 0.445±0.00 1.472±0.12 0.015±0.00 0.495±0.31 0.046±0.02 0.189±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0001 UCNEbase 14:98137606-99417500
CIL_00080U CIL_00080U_0001 VISTA 14:98699863-99300807
CIL_0005H1 CIL_0005H1_0001 CGP 14:99169287-99480879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003334 IEA keratinocyte development
GO:0003382 IEA epithelial cell morphogenesis
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007409 IEA axonogenesis
GO:0008285 IEA negative regulation of cell proliferation
GO:0009791 IEA post-embryonic development
GO:0010468 IEA regulation of gene expression
GO:0010837 IEA regulation of keratinocyte proliferation
GO:0019216 IEA regulation of lipid metabolic process
GO:0021773 IEA striatal medium spiny neuron differentiation
GO:0021902 IEA commitment of neuronal cell to specific neuron type in forebrain
GO:0021953 IEA central nervous system neuron differentiation
GO:0031077 IEA post-embryonic camera-type eye development
GO:0033077 IEA T cell differentiation in thymus
GO:0033153 IEA T cell receptor V(D)J recombination
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043066 IEA negative regulation of apoptotic process
GO:0043368 IEA positive T cell selection
GO:0043565 IEA sequence-specific DNA binding
GO:0043588 IEA skin development
GO:0045664 IEA regulation of neuron differentiation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046632 IEA alpha-beta T cell differentiation
GO:0046872 IEA metal ion binding
GO:0048538 IEA thymus development
GO:0071678 IEA olfactory bulb axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066060 Bcl11b-001 protein_coding Mus_musculus 0 3217
ENSMUST00000109891 Bcl11b-003 protein_coding Mus_musculus 0 2383
ENSMUST00000109887 Bcl11b-002 protein_coding Mus_musculus 0 2377
ENSDART00000097543 BCL11B (2 of 2)-201 protein_coding Danio_rerio 0 357
ENSMUST00000084564 Zfp629-001 protein_coding Mus_musculus 0.00001 58
ENSMUST00000122066 Zfp629-002 protein_coding Mus_musculus 0.00001 58
ENSMUST00000058038 Zfp629-003 protein_coding Mus_musculus 0.00001 58
ENSMUST00000057717 Zfp319-201 protein_coding Mus_musculus 0.00001 58

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