C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005H1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127152-ENSG00000183576 CGP 9606 14:99169287-99480879
GeneTranscriptPositionBiotype
ENSG00000127152 (BCL11B)
B-cell CLL/lymphoma 11B (zinc finger protein) 		ENST00000345514 (BCL11B-002) 99169287-99271485 protein_coding
ENST00000357195 (BCL11B-001) 99169287-99271228 protein_coding
ENST00000443726 (BCL11B-003) 99173961-99271524 protein_coding
ENSG00000183576 (SETD3)
SET domain containing 3 		ENST00000329331 (SETD3-003) 99409804-99480788 protein_coding
ENST00000331768 (SETD3-001) 99397746-99480879 protein_coding
ENST00000357563 (SETD3-004) 99411578-99480837 nonsense_mediated_decay
ENST00000436070 (SETD3-002) 99411279-99480790 protein_coding
ENST00000446066 (SETD3-005) 99398469-99480801 nonsense_mediated_decay
ENST00000453764 (SETD3-008) 99405315-99480860 nonsense_mediated_decay
ENST00000453938 (SETD3-007) 99458299-99478769 processed_transcript
ENST00000489770 (SETD3-006) 99398732-99413250 retained_intron
ENSG00000235785 (AL109767.1)
 ENST00000429450 (AL109767.1-001) 99262948-99264735 antisense
ENSG00000258383 (CTD-2200A16.1)
 ENST00000555595 (CTD-2200A16.1-001) 99324799-99332015 lincRNA
ENSG00000272439 (U6)
U6 spliceosomal RNA 		ENST00000607774 (U6.1-238) 99444306-99444412 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005H1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048251-ENSMUSG00000056770 CGP 10090 12:107910403-108179314
GeneTranscriptPositionBiotype
ENSMUSG00000048251 (Bcl11b)
B cell leukemia/lymphoma 11B 		ENSMUST00000066060 (Bcl11b-001) 107910403-108003602 protein_coding
ENSMUST00000109887 (Bcl11b-002) 107915222-108003414 protein_coding
ENSMUST00000109891 (Bcl11b-003) 107915222-108003414 protein_coding
ENSMUSG00000056770 (Setd3)
SET domain containing 3 		ENSMUST00000071095 (Setd3-001) 108106431-108179314 protein_coding
ENSMUST00000109879 (Setd3-007) 108116775-108179216 protein_coding
ENSMUST00000125210 (Setd3-006) 108112130-108115083 processed_transcript
ENSMUST00000125916 (Setd3-005) 108157984-108179213 protein_coding
ENSMUST00000132682 (Setd3-002) 108107038-108179227 nonsense_mediated_decay
ENSMUST00000147466 (Setd3-003) 108117034-108179263 nonsense_mediated_decay
ENSMUST00000148119 (Setd3-004) 108106666-108114947 retained_intron
ENSMUST00000169951 (Setd3-008) 108118297-108163009 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005H1_0001ENSG00000127152ENST00000345514ENST00000357195ENST00000443726ENSG00000183576ENST00000329331ENST00000331768ENST00000357563ENST00000436070ENST00000446066ENST00000453764ENST00000453938ENST00000489770ENSG00000235785ENST00000429450ENSG00000258383ENST00000555595ENSG00000272439ENST00000607774CIL_0005H1_0002ENSMUSG00000048251ENSMUST00000066060ENSMUST00000109887ENSMUST00000109891ENSMUSG00000056770ENSMUST00000071095ENSMUST00000109879ENSMUST00000125210ENSMUST00000125916ENSMUST00000132682ENSMUST00000147466ENSMUST00000148119ENSMUST00000169951
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005H1_0001ENSG00000127152ENST00000345514ENST00000357195ENST00000443726ENSG00000183576ENST00000329331ENST00000331768ENST00000446066ENSG00000235785ENST00000429450ENSG00000258383ENST00000555595ENSG00000272439ENST00000607774CIL_0005H1_0002ENSMUSG00000048251ENSMUST00000066060ENSMUST00000109887ENSMUST00000109891ENSMUSG00000056770ENSMUST00000071095ENSMUST00000109879ENSMUST00000132682ENSMUST00000147466ENSMUST00000148119
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127152 ENST00000345514 N/A N/A N/A 0.484±0.00 0.267±0.00 1.768±0.00 N/A N/A 0.631±0.00 0.405±0.00 N/A 0.107±0.00 N/A N/A
ENST00000357195 N/A 2.189±0.00 N/A 0.800±0.30 0.250±0.00 N/A N/A N/A 0.445±0.00 1.472±0.12 0.015±0.00 0.495±0.31 0.046±0.02 0.189±0.04
ENST00000443726 N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000183576 ENST00000329331 N/A N/A N/A 26.666±0.00 8.240±0.00 10.123±0.00 9.936±0.00 14.218±0.00 20.359±0.00 16.424±0.00 13.872±0.00 15.596±0.00 N/A N/A
ENST00000331768 17.977±0.00 13.093±0.00 1.764±0.00 24.655±0.00 10.335±7.40 11.677±8.64 18.011±11.77 33.219±0.00 11.542±1.31 24.172±0.00 21.958±17.76 8.482±5.66 17.076±3.54 35.234±4.98
ENST00000357563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446066 4.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.387±0.00 N/A N/A 19.751±0.00
ENST00000453764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235785 ENST00000429450 N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258383 ENST00000555595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00
ENSG00000272439 ENST00000607774 N/A 0.210±0.00 N/A N/A 70.510±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.563±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048251 ENSMUST00000066060 0.065±0.02 0.028±0.01 0.022±0.00 5.356±1.18 2.856±1.49 1.469±0.32 0.112±0.03 0.319±0.06 0.034±0.02 0.428±0.07 0.009±0.00 0.108±0.08 0.020±0.01 0.018±0.01
ENSMUST00000109887 0.068±0.01 0.179±0.05 0.086±0.00 N/A N/A N/A 0.233±0.11 0.862±0.27 0.046±0.03 0.277±0.00 0.024±0.00 0.127±0.05 0.129±0.07 0.070±0.02
ENSMUST00000109891 0.137±0.01 0.141±0.02 0.089±0.00 13.205±1.03 8.054±4.23 3.265±0.69 0.162±0.04 0.673±0.16 0.063±0.04 0.756±0.21 N/A 0.077±0.03 0.116±0.02 0.031±0.01
ENSMUSG00000056770 ENSMUST00000071095 15.095±5.94 4.269±2.00 30.605±0.40 15.427±2.52 5.585±2.70 8.207±4.33 10.692±3.72 15.993±5.93 15.356±8.12 8.276±3.89 40.232±0.84 8.705±8.53 15.555±5.56 17.960±6.41
ENSMUST00000109879 3.740±0.00 2.334±0.31 N/A N/A 2.129±0.26 2.104±0.55 N/A N/A 2.365±0.28 2.533±0.06 N/A 2.209±0.44 N/A N/A
ENSMUST00000125210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.426±1.41 6.163±0.83 N/A
ENSMUST00000147466 N/A N/A N/A N/A 2.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148119 3.817±0.45 2.378±0.29 N/A 3.771±0.13 1.941±0.29 2.737±0.17 N/A N/A 2.303±0.49 2.997±0.72 N/A 2.704±1.49 2.167±0.02 2.355±0.00
ENSMUST00000169951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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