C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulation of nuclear pre-mRNA domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046206 Rprd1a-201 ENSMUSG00000040446 10090 - 18:24484962-24530204 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046206 4.307±1.61 5.428±1.53 7.014±3.09 10.792±2.57 4.264±2.02 3.661±0.89 6.355±3.16 4.599±1.02 3.018±0.63 5.957±1.07 5.538±1.33 10.126±3.20 2.583±0.62 3.552±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W5 CIL_0003W5_0002 CGP 18:24470861-24530204
CIL_0003W2 CIL_0003W2_0002 CGP 18:24484962-24603817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016591 ISS DNA-directed RNA polymerase II, holoenzyme
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357384 RPRD1A-004 protein_coding Homo_sapiens 0 1450
ENST00000399022 RPRD1A-001 protein_coding Homo_sapiens 0 1827
ENST00000585953 RPRD1A-009 protein_coding Homo_sapiens 0 453
ENST00000588737 RPRD1A-002 protein_coding Homo_sapiens 0 1162
ENST00000589050 RPRD1A-003 non_stop_decay Homo_sapiens 0 1203
ENST00000590898 RPRD1A-005 protein_coding Homo_sapiens 0 1094
ENST00000591994 RPRD1A-006 retained_intron Homo_sapiens 0 405
ENST00000592674 RPRD1A-007 nonsense_mediated_decay Homo_sapiens 0 357

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