C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase long-chain family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357430 ACSL3-001 ENSG00000123983 9606 + 2:222860934-222944639 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000357430
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000357430 2.111±0.00 12.455±4.28 1.173±0.21 2.377±0.00 3.359±0.35 2.287±0.00 3.272±1.21 3.566±1.78 5.746±0.90 3.301±0.77 2.525±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XK CIL_0006XK_0001 CGP 2:222671738-222944639
CIL_00041H CIL_00041H_0002 CGP 2:222860934-223198399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004467 IMP long-chain fatty acid-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005741 IEA mitochondrial outer membrane
GO:0005777 IEA peroxisome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005811 IDA lipid particle
GO:0006633 IEA fatty acid biosynthetic process
GO:0007420 IEA brain development
GO:0007584 IEA response to nutrient
GO:0008152 IEA metabolic process
GO:0014070 IEA response to organic cyclic compound
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0019901 IPI protein kinase binding
GO:0019904 IPI protein domain specific binding
GO:0034379 IMP very-low-density lipoprotein particle assembly
GO:0042998 IMP positive regulation of Golgi to plasma membrane protein transport
GO:0044539 IDA long-chain fatty acid import
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051047 IMP positive regulation of secretion
GO:2001247 IMP positive regulation of phosphatidylcholine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035779 Acsl3-001 protein_coding Mus_musculus 0 3360
ENSMUST00000142704 Acsl3-003 protein_coding Mus_musculus 0 3338
ENSMUST00000134566 Acsl3-002 protein_coding Mus_musculus 0 2743
ENSMUST00000154777 Acsl3-005 retained_intron Mus_musculus 0 896
ENSMUST00000132997 Acsl3-006 retained_intron Mus_musculus 0 632
ENSMUST00000135642 Acsl3-004 protein_coding Mus_musculus 0 553
ENSMUST00000148608 Acsl3-007 retained_intron Mus_musculus 0 516
ENSDART00000006489 acsl4a-001 protein_coding Danio_rerio 0 226

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