C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: somatostatin receptor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357585 SSTR2-001 ENSG00000180616 9606 + 17:73165012-73176633 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungENST00000357585
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung
ENST00000357585 4.610±0.00 2.464±0.00 0.739±0.00 3.841±1.25 1.424±0.00 5.469±0.00 0.657±0.00 1.395±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067F CIL_00067F_0001 CGP 17:72645949-73176633
CIL_0007R4 CIL_0007R4_0001 VISTA 17:72990906-73592358
CIL_000678 CIL_000678_0001 CGP 17:73165012-73208507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004930 IEA G-protein coupled receptor activity
GO:0004994 IEA somatostatin receptor activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006937 IEA regulation of muscle contraction
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007187 TAS G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger
GO:0007193 IEA adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0007267 TAS cell-cell signaling
GO:0007283 IEA spermatogenesis
GO:0007584 TAS response to nutrient
GO:0007586 TAS digestion
GO:0008285 TAS negative regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0021549 IEA cerebellum development
GO:0030165 IPI PDZ domain binding
GO:0030432 IEA peristalsis
GO:0030900 IEA forebrain development
GO:0042594 IEA response to starvation
GO:0071385 IEA cellular response to glucocorticoid stimulus
GO:0071392 IEA cellular response to estradiol stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146390 Sstr2-002 protein_coding Mus_musculus 0 1384
ENSMUST00000106630 Sstr2-001 protein_coding Mus_musculus 0 1199
ENSMUST00000067591 Sstr2-201 protein_coding Mus_musculus 0 1162
ENSMUST00000001809 Pabpc1-001 protein_coding Mus_musculus 0 351
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000008 62
ENSMUST00000024742 Nfkbie-201 protein_coding Mus_musculus 0.0000008 62
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.0001 55

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