C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 4 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357881 RFX4-003 ENSG00000111783 9606 + 12:106601137-106761659 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000357881
Transcript ID Heart
ENST00000357881 0.024±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028K CIL_00028K_0001 CGP 12:106357658-106762803
CIL_0007NZ CIL_0007NZ_0001 UCNEbase 12:106418267-106672625
CIL_0001MF CIL_0001MF_0001 CGP 12:106582907-106889316

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0021516 IEA dorsal spinal cord development
GO:0021537 IEA telencephalon development
GO:0021696 IEA cerebellar cortex morphogenesis
GO:0021914 IEA negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0030900 IEA forebrain development
GO:0030901 IEA midbrain development
GO:0042384 IEA cilium assembly
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070613 IEA regulation of protein processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060397 Rfx4-003 protein_coding Mus_musculus 0 2987
ENSMUST00000166696 Rfx4-006 protein_coding Mus_musculus 0 2614
ENSMUST00000095388 Rfx4-002 protein_coding Mus_musculus 0 2505
ENSMUST00000020226 Rfx4-001 processed_transcript Mus_musculus 0 1236
ENSDART00000031752 rfx4-001 protein_coding Danio_rerio 0 1155
ENSMUST00000173479 Rfx4-004 processed_transcript Mus_musculus 0 259
ENSMUST00000165868 Rfx4-005 processed_transcript Mus_musculus 0 257

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