C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358389 CNOT3-003 ENSG00000088038 9606 + 19:54141396-54155680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLungENST00000358389
Transcript ID Bladder Brain Breast Colon Lung
ENST00000358389 0.839±0.00 0.643±0.00 0.709±0.00 0.382±0.00 0.577±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681
CIL_0001U4 CIL_0001U4_0001 CGP 19:54137728-54159882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0001829 IEA trophectodermal cell differentiation
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:2000036 IMP regulation of stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038913 Cnot3-002 protein_coding Mus_musculus 0 3472
ENSMUST00000135977 Cnot3-003 nonsense_mediated_decay Mus_musculus 0 1940
ENSMUST00000143085 Cnot3-001 retained_intron Mus_musculus 0 1816
ENSMUST00000132344 Cnot3-006 protein_coding Mus_musculus 0 1410
ENSMUST00000129973 Cnot3-005 retained_intron Mus_musculus 0 1188
ENSMUST00000160200 Cnot3-007 protein_coding Mus_musculus 0 538
ENSMUST00000144097 Cnot3-004 retained_intron Mus_musculus 0 538
ENSMUST00000019878 Leng1-001 protein_coding Mus_musculus 0 538
ENSDART00000137699 cnot3a-001 protein_coding Danio_rerio 0 436
ENSDART00000136697 cnot3b-001 protein_coding Danio_rerio 0 424
ENSDART00000081485 cnot3b-202 protein_coding Danio_rerio 0 416
ENSDART00000102100 cnot3a-201 protein_coding Danio_rerio 0 414

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