C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leukocyte receptor cluster (LRC) member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019878 Leng1-001 ENSMUSG00000078813 10090 - 7:3660098-3665840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000019878
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000019878 8.179±1.93 9.022±0.65 16.590±3.75 7.313±1.25 8.623±0.60 5.008±1.31 9.183±1.74 6.371±2.13 3.706±0.35 14.693±4.72 18.055±6.49 5.906±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0002 CGP 7:3629985-3661108
CIL_0001U4 CIL_0001U4_0002 CGP 7:3645290-3665840
CIL_0001GV CIL_0001GV_0002 CGP 7:3660098-3677524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221232 CNOT3-001 protein_coding Homo_sapiens 0 540
ENST00000222224 LENG1-001 protein_coding Homo_sapiens 0 1354
ENST00000358389 CNOT3-003 protein_coding Homo_sapiens 0 538
ENST00000447684 CNOT3-201 protein_coding Homo_sapiens 0 538
ENST00000471126 CNOT3-011 protein_coding Homo_sapiens 0 590
ENST00000610829 CNOT3-217 protein_coding Homo_sapiens 0 538
ENST00000610883 CNOT3-211 protein_coding Homo_sapiens 0 573
ENST00000610998 LENG1-001 protein_coding Homo_sapiens 0 815
ENST00000611252 CNOT3-214 protein_coding Homo_sapiens 0 573
ENST00000611667 CNOT3-224 protein_coding Homo_sapiens 0 538
ENST00000612029 CNOT3-002 retained_intron Homo_sapiens 0 595
ENST00000612466 CNOT3-006 retained_intron Homo_sapiens 0 590
ENST00000612924 CNOT3-205 protein_coding Homo_sapiens 0 573
ENST00000613028 CNOT3-011 protein_coding Homo_sapiens 0 590
ENST00000613073 CNOT3-005 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000613528 CNOT3-225 protein_coding Homo_sapiens 0 538
ENST00000613622 LENG1-001 protein_coding Homo_sapiens 0 850
ENST00000613636 CNOT3-208 protein_coding Homo_sapiens 0 538
ENST00000613752 CNOT3-202 protein_coding Homo_sapiens 0 538
ENST00000614037 LENG1-203 protein_coding Homo_sapiens 0 808
ENST00000614542 CNOT3-005 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000614598 CNOT3-212 protein_coding Homo_sapiens 0 538
ENST00000614649 CNOT3-206 protein_coding Homo_sapiens 0 538
ENST00000615030 CNOT3-209 protein_coding Homo_sapiens 0 538
ENST00000615034 CNOT3-003 retained_intron Homo_sapiens 0 595
ENST00000615038 CNOT3-005 retained_intron Homo_sapiens 0 597
ENST00000615629 CNOT3-003 retained_intron Homo_sapiens 0 595
ENST00000616102 CNOT3-220 protein_coding Homo_sapiens 0 538
ENST00000616103 LENG1-001 protein_coding Homo_sapiens 0 854
ENST00000616359 CNOT3-210 protein_coding Homo_sapiens 0 573
ENST00000616816 LENG1-204 protein_coding Homo_sapiens 0 808
ENST00000616910 CNOT3-226 protein_coding Homo_sapiens 0 573
ENST00000617218 CNOT3-207 protein_coding Homo_sapiens 0 538
ENST00000617371 CNOT3-006 retained_intron Homo_sapiens 0 590
ENST00000617592 LENG1-206 protein_coding Homo_sapiens 0 808
ENST00000617930 CNOT3-007 retained_intron Homo_sapiens 0 597
ENST00000617936 CNOT3-002 retained_intron Homo_sapiens 0 540
ENST00000617982 CNOT3-001 protein_coding Homo_sapiens 0 540
ENST00000618130 CNOT3-005 retained_intron Homo_sapiens 0 597
ENST00000618405 CNOT3-221 protein_coding Homo_sapiens 0 538
ENST00000618717 CNOT3-001 protein_coding Homo_sapiens 0 538
ENST00000618939 CNOT3-002 retained_intron Homo_sapiens 0 595
ENST00000619316 CNOT3-001 protein_coding Homo_sapiens 0 538
ENST00000619347 CNOT3-203 protein_coding Homo_sapiens 0 538
ENST00000619557 CNOT3-215 protein_coding Homo_sapiens 0 538
ENST00000619567 CNOT3-216 protein_coding Homo_sapiens 0 538
ENST00000619669 LENG1-202 protein_coding Homo_sapiens 0 808
ENST00000619854 CNOT3-204 protein_coding Homo_sapiens 0 573
ENST00000620060 CNOT3-222 protein_coding Homo_sapiens 0 573
ENST00000620419 CNOT3-218 protein_coding Homo_sapiens 0 538
ENST00000620573 CNOT3-219 protein_coding Homo_sapiens 0 573
ENST00000620970 CNOT3-003 protein_coding Homo_sapiens 0 538
ENST00000621174 CNOT3-002 retained_intron Homo_sapiens 0 540
ENST00000621285 LENG1-205 protein_coding Homo_sapiens 0 808
ENST00000621927 LENG1-201 protein_coding Homo_sapiens 0 808
ENST00000622131 CNOT3-213 protein_coding Homo_sapiens 0 538
ENST00000622193 CNOT3-223 protein_coding Homo_sapiens 0 538
ENST00000622342 CNOT3-007 retained_intron Homo_sapiens 0 597

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