C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidic acid receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358883 LPAR1-003 ENSG00000198121 9606 - 9:110874177-111038085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000358883
Transcript ID Bladder Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000358883 2.121±0.00 3.302±0.00 1.161±0.00 0.531±0.00 4.854±0.00 1.681±0.00 0.647±0.00 2.069±0.00 1.520±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016H CIL_00016H_0001 CGP 9:110668771-111038458
CIL_00093E CIL_00093E_0001 VISTA 9:110861070-111465765
CIL_00016L CIL_00016L_0001 CGP 9:110873263-111328520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004930 TAS:IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007186 TAS:IEA G-protein coupled receptor signaling pathway
GO:0007202 TAS activation of phospholipase C activity
GO:0007204 TAS positive regulation of cytosolic calcium ion concentration
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0030139 IDA endocytic vesicle
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070915 IEA lysophosphatidic acid receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055018 Lpar1-001 protein_coding Mus_musculus 0 1552
ENSMUST00000107574 Lpar1-004 protein_coding Mus_musculus 0 1483
ENSMUST00000107575 Lpar1-003 protein_coding Mus_musculus 0 1483
ENSMUST00000107571 Lpar1-002 protein_coding Mus_musculus 0 1483
ENSMUST00000107570 Lpar1-005 protein_coding Mus_musculus 0 1421
ENSMUST00000155170 Lpar1-008 protein_coding Mus_musculus 0 292
ENSMUST00000147354 Lpar1-006 protein_coding Mus_musculus 0 226
ENSMUST00000145361 Lpar1-007 protein_coding Mus_musculus 8.00141e-43 180

Loading