C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidic acid receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055018 Lpar1-001 ENSMUSG00000038668 10090 - 4:58435255-58553357 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055018
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055018 16.699±9.57 8.577±2.80 18.390±4.37 3.019±0.80 15.762±4.27 28.520±3.61 3.841±1.44 4.139±0.31 0.529±0.27 10.578±1.15 0.732±0.31 8.670±4.98 2.802±2.20 4.449±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016H CIL_00016H_0002 CGP 4:58285960-58553898
CIL_00093E CIL_00093E_0002 VISTA 4:58366631-58972430
CIL_00016L CIL_00016L_0002 CGP 4:58435255-58785720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000187 IDA activation of MAPK activity
GO:0005515 IPI protein binding
GO:0007186 IDA G-protein coupled receptor signaling pathway
GO:0009986 ISS cell surface
GO:0016021 IEA integral component of membrane
GO:0030165 IPI PDZ domain binding
GO:0032060 IGI bleb assembly
GO:0035025 IDA positive regulation of Rho protein signal transduction
GO:0043410 IDA positive regulation of MAPK cascade
GO:0070915 IEA lysophosphatidic acid receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358883 LPAR1-003 protein_coding Homo_sapiens 0 1552
ENST00000374430 LPAR1-002 protein_coding Homo_sapiens 0 1483
ENST00000374431 LPAR1-001 protein_coding Homo_sapiens 0 1483
ENST00000441240 LPAR1-004 protein_coding Homo_sapiens 0 721
ENST00000541779 LPAR1-201 protein_coding Homo_sapiens 0 1421

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