C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, small subunit B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359175 SPTSSB-001 ENSG00000196542 9606 - 3:161344792-161372880 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000359175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000359175 0.014±0.00 0.270±0.00 0.195±0.00 3.001±1.11 0.162±0.04 0.081±0.00 0.045±0.04 0.399±0.00 1.096±1.07 0.047±0.00 0.109±0.01 0.051±0.04 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K1 CIL_0004K1_0002 CGP 3:161104696-161372880
CIL_00049N CIL_00049N_0002 CGP 3:161344792-161503942

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 IDA serine C-palmitoyltransferase activity
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane
GO:0017059 IDA serine C-palmitoyltransferase complex
GO:0030148 TAS sphingolipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051239 Sptssb-201 protein_coding Mus_musculus 0 344
ENSMUST00000171529 Sptssb-202 protein_coding Mus_musculus 0 274

Loading