C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribulose-5-phosphate-3-epimerase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359429 RPE-001 ENSG00000197713 9606 + 2:210002565-210021576 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000359429
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000359429 4.318±0.00 5.245±0.00 4.282±0.00 7.189±0.00 2.162±0.00 3.982±0.00 5.672±0.00 8.214±0.00 1.515±0.00 5.895±1.29 4.137±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P1 CIL_0006P1_0001 CGP 2:209771993-210022259
CIL_0006P6 CIL_0006P6_0001 CGP 2:210002565-210171383

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004750 IDA ribulose-phosphate 3-epimerase activity
GO:0005829 TAS cytosol
GO:0005975 IEA:IDA carbohydrate metabolic process
GO:0006098 IDA pentose-phosphate shunt
GO:0008152 IEA metabolic process
GO:0016857 IEA racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0042802 IPI identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0044281 TAS small molecule metabolic process
GO:0046872 IDA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027157 Rpe-001 protein_coding Mus_musculus 0 1085
ENSMUST00000113995 Rpe-002 protein_coding Mus_musculus 0 976
ENSMUST00000142920 Rpe-003 nonsense_mediated_decay Mus_musculus 0 902
ENSMUST00000190404 Rpe-005 nonsense_mediated_decay Mus_musculus 0 773
ENSMUST00000129190 Kansl1l-003 protein_coding Mus_musculus 0 219
ENSMUST00000151016 Rpe-004 nonsense_mediated_decay Mus_musculus 6.02558e-44 183
ENSMUST00000068168 Kansl1l-001 protein_coding Mus_musculus 3.00018e-42 178

Loading