C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat and HMG-box DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360586 WDHD1-001 ENSG00000198554 9606 - 14:54938950-55027077 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLungOvaryPlacentaTestisENST00000360586
Transcript ID Adipose Adrenal Brain Colon Lung Ovary Placenta Testis
ENST00000360586 0.303±0.00 0.105±0.00 0.319±0.00 0.395±0.00 0.541±0.00 1.341±0.87 0.356±0.11 0.543±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000005 CIL_000005_0002 CGP 14:54842008-55027105
CIL_000603 CIL_000603_0002 CGP 14:54938950-55049488

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0006396 IEA RNA processing
GO:0033044 IEA regulation of chromosome organization
GO:0070063 IEA RNA polymerase binding
GO:0070829 IEA heterochromatin maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187531 Wdhd1-201 protein_coding Mus_musculus 0 3374
ENSMUST00000111791 Wdhd1-001 protein_coding Mus_musculus 0 3374
ENSMUST00000111792 Wdhd1-004 protein_coding Mus_musculus 0 2204
ENSMUST00000111790 Wdhd1-002 protein_coding Mus_musculus 0 1965
ENSMUST00000139124 Wdhd1-003 retained_intron Mus_musculus 0 540

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