C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, MYND-type containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360911 ZMYND8-001 ENSG00000101040 9606 - 20:47209214-47356706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360911
Transcript ID Adrenal Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360911 2.890±0.00 1.539±0.00 1.412±1.26 4.402±0.00 1.194±0.00 1.329±0.00 1.269±0.00 4.285±2.11 1.802±0.56 3.597±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DE CIL_0004DE_0001 CGP 20:46894624-47356889
CIL_0008NW CIL_0008NW_0001 VISTA 20:47083832-47684912
CIL_0006IW CIL_0006IW_0002 CGP 20:47209214-47656877

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001106 ISS RNA polymerase II transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0008270 IEA zinc ion binding
GO:0070491 ISS repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088113 Zmynd8-007 protein_coding Mus_musculus 0 3670
ENSMUST00000177633 Zmynd8-203 protein_coding Mus_musculus 0 3659
ENSMUST00000170272 Zmynd8-202 protein_coding Mus_musculus 0 3581
ENSMUST00000152682 Zmynd8-009 processed_transcript Mus_musculus 0 3319
ENSMUST00000109266 Zmynd8-201 protein_coding Mus_musculus 0 3308
ENSMUST00000018050 Zmynd8-014 protein_coding Mus_musculus 0 3308
ENSMUST00000099084 Zmynd8-015 protein_coding Mus_musculus 0 2671
ENSMUST00000109269 Zmynd8-001 protein_coding Mus_musculus 0 2398
ENSMUST00000109262 Zmynd8-010 protein_coding Mus_musculus 0 1821
ENSMUST00000153655 Zmynd8-013 protein_coding Mus_musculus 0 1770
ENSMUST00000186319 RP23-315J23.1-001 processed_pseudogene Mus_musculus 0 1016
ENSMUST00000191548 RP23-315J23.4-001 processed_pseudogene Mus_musculus 0 1016
ENSMUST00000188352 RP23-124D10.3-001 processed_pseudogene Mus_musculus 0 1016
ENSMUST00000190271 RP24-282E23.2-001 processed_pseudogene Mus_musculus 0 1011
ENSMUST00000149369 Zmynd8-017 processed_transcript Mus_musculus 0 920
ENSMUST00000136842 Zmynd8-011 protein_coding Mus_musculus 0 752
ENSDART00000040235 zmynd8-201 protein_coding Danio_rerio 0 676
ENSDART00000124510 prkcbp1l-201 protein_coding Danio_rerio 0 604
ENSDART00000005015 prkcbp1l-001 protein_coding Danio_rerio 0 604
ENSMUST00000117587 Gm9246-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000139907 Zmynd8-016 processed_transcript Mus_musculus 0 377
ENSMUST00000144530 Zmynd8-012 protein_coding Mus_musculus 0 243
ENSMUST00000148674 Zmynd8-006 retained_intron Mus_musculus 1.4013e-45 189

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