C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361198 LDB1-001 ENSG00000198728 9606 - 10:102107560-102114946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000361198
Transcript ID Breast
ENST00000361198 1.983±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WD CIL_0005WD_0001 CGP 10:102065390-102120453
CIL_00058F CIL_00058F_0001 CGP 10:102107560-102150331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000972 ISS transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0003714 TAS transcription corepressor activity
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 NAS transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0019899 IPI enzyme binding
GO:0030182 ISS neuron differentiation
GO:0030274 ISS LIM domain binding
GO:0032784 ISS regulation of DNA-templated transcription, elongation
GO:0042803 ISS protein homodimerization activity
GO:0043234 ISS protein complex
GO:0043973 ISS histone H3-K4 acetylation
GO:0045647 ISS negative regulation of erythrocyte differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046985 ISS positive regulation of hemoglobin biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056931 Ldb1-003 protein_coding Mus_musculus 0 3025
ENSMUST00000185355 Ldb1-201 protein_coding Mus_musculus 0 2318
ENSMUST00000152946 Ldb1-002 protein_coding Mus_musculus 0 2316
ENSMUST00000156585 Ldb1-007 protein_coding Mus_musculus 0 2250
ENSMUST00000026252 Ldb1-001 protein_coding Mus_musculus 0 2250
ENSMUST00000137771 Ldb1-004 protein_coding Mus_musculus 0 2019
ENSMUST00000136203 Ldb1-005 retained_intron Mus_musculus 0 1094
ENSMUST00000126320 Ldb1-006 retained_intron Mus_musculus 0 361

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